Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6432
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical
           protein Y69H2.3d protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 348 CVITGGRTSCESAWLSTITPPIFCSEAVMRFGLKGGAAVV 467
           C ++ G+ +C     +  TPP   + A +R G KGG  +V
Sbjct: 177 CSMSTGKPTCVPVRTAPETPPTGITCANVRCGFKGGCGMV 216


>Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical
           protein Y69H2.3a protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 348 CVITGGRTSCESAWLSTITPPIFCSEAVMRFGLKGGAAVV 467
           C ++ G+ +C     +  TPP   + A +R G KGG  +V
Sbjct: 282 CSMSTGKPTCVPVRTAPETPPTGITCANVRCGFKGGCGMV 321


>Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical
           protein C25F9.2 protein.
          Length = 1469

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 296 VEVNREHNLLSTNVFLKRGIRR 231
           V +NR+ NL  +N+  +RGI+R
Sbjct: 45  VVINRKQNLTESNILRRRGIKR 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,289,382
Number of Sequences: 27780
Number of extensions: 335585
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)