Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6431
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    27   2.1  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   2.8  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    27   2.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   6.5  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   8.6  

>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 493 NFCGFDFYYTMLLLHRGSQSWTFVGYVFH*K-NWYPPAGFEHRCIATL 633
           N+CG  F++T   LH     W F   V     N+ PP   E++ +  L
Sbjct: 321 NYCGGCFFWTYKFLHGKGGDWDFRSVVEDKVINYPPPPPTENKAMPAL 368


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 703 KIYSRYEIMFEKWIAILTYT 644
           K Y R++  +E+W+A++ YT
Sbjct: 935 KFYIRFDSNYEQWLALIKYT 954


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 183 NFPQFLSLTHTHNAHTQKLSLIRYY-LVHSNKRYVDAE 73
           N+P FL     +  + Q+  +IRY+ L H    Y+D +
Sbjct: 130 NYPWFLPYFDAYPFNVQRADVIRYFVLYHYGGNYIDLD 167


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 478  DYANYNFCGFDFYYTMLLLHRGSQSW 555
            +Y   N  G+D Y+ + L  R S++W
Sbjct: 2087 EYVMANTDGYDLYHVLWLKSRSSEAW 2112


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 452 DSQEVLPPVITQIIIFAGLIF--ITRCYSFTVEVN 550
           +  EVLPPV  + ++F   +F  +  C  F + +N
Sbjct: 78  EQNEVLPPVKNESVLFLEKVFNAVDICVKFHLSIN 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,093
Number of Sequences: 5004
Number of extensions: 68503
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)