Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6431
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    29   2.9  
02_05_0377 + 28408751-28409113,28409545-28410129,28411212-28411385     29   3.9  
09_04_0564 + 18565583-18566449,18569662-18570123                       29   5.2  
08_02_1172 + 24898290-24899141,24900864-24901328                       29   5.2  
01_01_0555 + 4080316-4081680                                           29   5.2  
07_01_0156 + 1106058-1107596                                           28   9.0  
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241...    28   9.0  
01_06_1749 - 39636951-39638102                                         28   9.0  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -3

Query: 625 RCTGVRIQQAGTNFSNEIRTQQMSTIDFHGE 533
           RCTGV I   G N   +I T      DFHGE
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>02_05_0377 + 28408751-28409113,28409545-28410129,28411212-28411385
          Length = 373

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +3

Query: 63  GLRAQRLHIVY*NEQ--DSIVLMTAFVYERCGCEL-TIETAESYIHVSVCFI 209
           GL+A RL +++ N    DS+VL T  V    GC L T++   + +H  +C +
Sbjct: 289 GLQALRLTVLHLNVTTLDSLVLYTLSVKVEEGCSLTTVDDIAAAVHHVLCIV 340


>09_04_0564 + 18565583-18566449,18569662-18570123
          Length = 442

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 161 NDRNCGKLHTCLCMFYLKRQRS 226
           +++NCGKL  CLC    K +RS
Sbjct: 375 HEKNCGKLWYCLCGSEFKHKRS 396


>08_02_1172 + 24898290-24899141,24900864-24901328
          Length = 438

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 161 NDRNCGKLHTCLCMFYLKRQRS 226
           +++NCGKL  CLC    K +RS
Sbjct: 370 HEKNCGKLWYCLCGSEFKHKRS 391


>01_01_0555 + 4080316-4081680
          Length = 454

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -3

Query: 436 MRFGSKGGAAVATILRPYNLYLEVSGAFTCL*APATTQHQ 317
           + FG  GGAAVA  L+P N ++ V     CL   ATT+ Q
Sbjct: 384 LEFG--GGAAVA--LKPENAFVAVQEGTLCLAIVATTEQQ 419


>07_01_0156 + 1106058-1107596
          Length = 512

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +2

Query: 380 VVRPQYSCNGCPTLRTETHYSTRADSQEVLPPVITQII 493
           +V+ + S   CP ++ +  Y+    SQ++LP + + +I
Sbjct: 342 IVKGKPSLKKCPHMKVDLVYTPHGSSQDLLPEIKSSVI 379


>05_05_0051 +
           21923402-21923763,21923861-21923951,21924048-21924196,
           21924279-21924522,21924664-21924768,21924842-21925024,
           21925118-21925319,21925896-21926372,21926680-21926771,
           21927265-21927444
          Length = 694

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 105 QDSIVLMTAFVYERCGCELTIETAESYIHVSVCFI*SVNEAE-LGTHTKNSI 257
           ++S+   T  VYE C  E T+ET E     +V  +  V  AE LG  T  SI
Sbjct: 454 KESVGAETEVVYEECPTEATVETGE--FSYAVVVVGEVPYAEWLGDRTDLSI 503


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 393 SIVATAAPPFEPKRIT 440
           S+ + AAPPF+P RIT
Sbjct: 165 SVASAAAPPFDPSRIT 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,246,932
Number of Sequences: 37544
Number of extensions: 426676
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)