Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6431
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025462-5|AAN72425.1|  129|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z66516-2|CAA91360.1|  418|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U23510-5|AAY55872.1|  110|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AF025462-5|AAN72425.1|  129|Caenorhabditis elegans Hypothetical
           protein K10F12.7 protein.
          Length = 129

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 202 HTETCM*LSAVSIVNSHPQRSYTKAVINTILSCSF**TICRR*ARNPSGC 53
           HT  C+ L  ++ +  H +     A   T+LSC F    C   +++P+ C
Sbjct: 75  HTNLCVSLQKITTLEVHGRTGGAPACAPTLLSCHFMLLQCFCLSKSPASC 124


>Z66516-2|CAA91360.1|  418|Caenorhabditis elegans Hypothetical
           protein W03C9.2 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 473 PVITQIIIFAGLIFITRCYSFTVEVNRGHLLGTYFIR 583
           PV+  +  F     +T C  F +  N GHL G + IR
Sbjct: 150 PVLDMLSHFHSEPLLTNCERFLMSTNIGHLDGNHLIR 186


>U23510-5|AAY55872.1|  110|Caenorhabditis elegans Hypothetical
           protein R12C12.10 protein.
          Length = 110

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 365 HLEI*VVRPQYSCNGCPT 418
           HL    ++PQ +CNGCPT
Sbjct: 16  HLTTSFLQPQPTCNGCPT 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,666
Number of Sequences: 27780
Number of extensions: 385804
Number of successful extensions: 746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)