Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6429
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    27   0.93 
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    27   1.6  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    25   5.0  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    25   5.0  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    24   8.7  

>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 415 NWVPGPPSSLRKKKSI-YFRSRSQ 347
           NW  GPP S+R  KS  YF++  Q
Sbjct: 4   NWFEGPPCSVRNCKSTWYFKNAGQ 27


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +2

Query: 17  NCEQ*NKRAPECLWDCGHVLRTYTGVVHARFHARLFIESE*YNGEPGPGYCLSFFDFLLF 196
           NC++ +  +P  +W  G      T  V +   + + + S   N +P     L+     LF
Sbjct: 65  NCKKLHLISPN-IWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLF 123

Query: 197 RWVDKLTNYLVLSGY 241
           R+   +  YLVL GY
Sbjct: 124 RYQGHIGAYLVLGGY 138


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 364 NKYFFFYVSSRGGPV 408
           NK F++Y+S  GGPV
Sbjct: 203 NKLFWWYMSKSGGPV 217


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 184 FPIV*MGGQAHELPSVKWLPEPIDIYNVNAAT 279
           +P+V MG  A  L ++ +LP+ I I+   A T
Sbjct: 140 WPVVFMGVLATVLVNIGFLPQYISIFRARAVT 171


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 430 THYRANWVPGPPSSLRKKKSIYFRSRSQL 344
           T+Y +NW P P  + R +   + +  S L
Sbjct: 491 TYYMSNWEPPPKETDRNRWKAWLKGYSDL 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,761
Number of Sequences: 5004
Number of extensions: 36052
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)