Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6427
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.74
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.3
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.3
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 27 3.9
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 26 5.2
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 26 5.2
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 26 5.2
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 26 5.2
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 26 6.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.9
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 9.1
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 9.1
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 25 9.1
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.74
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 581 APSEPLSTPLMHTTASTACRPQKPAPPAAPHTLRAVPALQILPS 712
AP+ P+STP + ++ + P PP P ++ P+ +P+
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPA 1725
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 578 TAPSEPLSTPLMHTTASTACRPQKPAPPAAPHTLRAVPALQILPS 712
T+ S S+P +++ P PAP P ++ PAL + PS
Sbjct: 414 TSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPS 458
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 563 PSTKLTAPSEPLSTPLMHTTASTACRPQKPAPPAAP 670
P A + P++ P+ A+ P PAP AAP
Sbjct: 372 PQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAP 407
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 641 PQKPAPPAAPHTLRAV 688
PQK PA+PHTL++V
Sbjct: 382 PQKGVRPASPHTLKSV 397
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +1
Query: 325 KLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK----IVAHQAEEIAYPKYEYNYS 486
K A ++ T P P ++AP+A HS P +++A ++ +P E ++S
Sbjct: 119 KRATSSQETKRDRPLPNIRNSAPSATRSHSTPCVAPGYLRTSNEAADVVFPHEEAHFS 176
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +2
Query: 551 RAHTPSTKLTA-PSEPLSTPLMHTTASTACRPQKPAPPAAP 670
+ +TPS P PL++P T Q P+P A P
Sbjct: 44 KQNTPSPNSECRPLTPLNSPFRRTVEGDTANLQAPSPTACP 84
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 584 PSEPLSTPLMHTTASTACRPQKPAPPAAPHT 676
P L+ PL + ASTA PQ+ +PPAAP T
Sbjct: 262 PVSRLTQPLP-SLASTAS-PQQVSPPAAPST 290
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 292 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAH 441
PQT ++P+ +A +TPV+ + P P T P ++ AP+ AH
Sbjct: 222 PQTTQDSSPILTMAPSTPVSVGSTP-PSTPSVLP--IAKQLAPMNVCKAH 268
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = +1
Query: 499 HSGDNKSQQEVRDGDAVKGSYSFHEADGSIRTVEYTADAHNGF 627
H N ++Q V + + DG + T D HNGF
Sbjct: 17 HVSQNIAKQVVNNENVFMKLVMTRMLDGKTEVIPLTTDVHNGF 59
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 617 TTASTACRPQKPAPPAAPHTLR 682
T ASTA +KP PPA P R
Sbjct: 211 TAASTASPVKKPPPPAPPKPRR 232
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +2
Query: 560 TPSTKLTA--PSEPLSTPLMHTTASTACRPQKPAPPAAPHTLRAVPALQILP 709
TP + T P ++TP+ TT +T P T V A+ ILP
Sbjct: 143 TPMEETTTILPMAAMTTPMEETTTTTPMVETTTIPTVETMTTPMVEAMTILP 194
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +1
Query: 469 YEYNYSV---ADGHSGDNKSQQEVRDGDAVKGSYS 564
+++N+S +DGHS D QQ + D+V +S
Sbjct: 104 FDFNFSCYFGSDGHSNDTLCQQYIDVADSVGEQFS 138
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 584 PSEPLSTPLMHTTASTACRPQKPAPPAAP 670
PS P P+ + +S P K PP+AP
Sbjct: 967 PSIPPPLPVSNILSSPTSEPPKDHPPSAP 995
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 593 PLSTPLMHTTASTACRPQKPAPPAAPHTLRAVPALQ 700
PL+ L+ ++A P P P A+ L A P+++
Sbjct: 410 PLNPTLLQNALTSASLPSPPTPHASASKLAAKPSVK 445
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 136 RHGVRCSGRKLPQQMSSGLVPPGD 65
R+ + CSGRKL +Q +G GD
Sbjct: 59 RNEITCSGRKLYRQKGTGHARVGD 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,693
Number of Sequences: 5004
Number of extensions: 46783
Number of successful extensions: 163
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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