Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6427
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   1.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 569 TKLTAPSEPLSTPLMHTTASTACRPQKPAPPAAPHTLRAVPALQILP 709
           T  + PS P++T    T  +     ++  PP  P  +R +P++ +LP
Sbjct: 614 TNQSCPSPPVTTKRDGTQET-----EERLPPLPPKRIRKMPSMPLLP 655


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 581 APSEPLSTPLMHTTASTACRPQKPAPPAAPHTLRAVPALQILP 709
           +P  P ST  +    + A R Q+P     PH + + PA   LP
Sbjct: 587 SPDWP-STSQIQRGVNAAIRSQEPFYITEPHQIFSFPARLSLP 628


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 253 ESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHS 414
           + V+ ++ I       I  A  V K  +   V       P+T   +PAAVSY S
Sbjct: 65  KGVTYKHTIIEMDSNPIKTALSVCKSLIERQVYAVVVSHPLTGDLSPAAVSYTS 118


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 82  LVPPGDQLWTPP 47
           + P GD LW PP
Sbjct: 133 IYPNGDVLWVPP 144


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 617  TTASTACRPQKPAPPAAP 670
            T   TA R Q+P PP  P
Sbjct: 1344 TLERTAWRQQQPPPPPPP 1361


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 641 PQKPAPPAAPHTLRAVPALQILPSLNNQL 727
           P +  PP  PHT       Q L S N ++
Sbjct: 97  PTRKLPPLHPHTAMVTHLPQTLTSENVEI 125


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 557 HTPSTKLTAPSEPLSTPLMHTTASTACRPQKPAP 658
           H  ST L   S P +  + HT       P+ P P
Sbjct: 442 HQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGP 475


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 69  PGGTSPLLICWGSFLPE 119
           P    P++  WG F+PE
Sbjct: 175 PWALMPVMGVWGRFVPE 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,718
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)