Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6425
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    27   1.5  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    27   2.0  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    27   2.0  
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun...    26   3.5  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    26   3.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   3.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   3.5  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   6.2  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.2  

>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 453 REVQRP-SIVRQRKHNT*NVWSILDDCRHFVSTI-KA*QRWHAV 328
           RE   P S VR R H    +      C H +ST+ KA  R HA+
Sbjct: 69  REPLSPMSFVRMRSHRVNKIGRSSQQCDHVLSTVDKAISRVHAI 112


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 280 EAKRKKQIESFKVFVECFKC 221
           E KR+  I+ +K F +CF C
Sbjct: 138 ECKRRYNIKLWKTFTDCFNC 157


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 280 EAKRKKQIESFKVFVECFKC 221
           E KR+  I+ +K F +CF C
Sbjct: 135 ECKRRYSIKLWKTFTDCFNC 154


>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
           Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 353 KRDRDGMQSVSNRNYSKRKSERIT*SEAE 267
           +R+ DG+   S+RN  KRK++ ++ S+ +
Sbjct: 78  QRNEDGLVRYSDRNKPKRKNDNLSLSDLD 106


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -2

Query: 288 DHLKRSGRSKLRVSKYLLSVLSVEYSVKLYSGRIFIYPEPQRVTI*SLIA 139
           +H+KR     L  S + LS ++ + ++   SG++ I+ + Q +    L+A
Sbjct: 222 EHIKRCTSLDLTNSVFSLSKVNTDCAILTSSGKLKIFSKAQNIVFDVLLA 271


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 182 IKILPEYNLTLYSTLKTLNKYFETLNLLLPL 274
           I ++P  +  +YS L+TL K F+ L+   P+
Sbjct: 697 IDVIPSKSAEVYSHLETLTKTFKNLSEAKPI 727


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 479 GELGTGPPLEKYNAHLLSGSGNIIPKMCGVFSTIV 375
           G + + PP    N+ L++G+    P  CG  S I+
Sbjct: 492 GAITSVPPYSLQNSQLMNGTSMSSPSACGGISLIL 526


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 5   SLVEKKKKRKTLLTDEY 55
           +LV+KKKKR+TL  + Y
Sbjct: 406 TLVQKKKKRRTLPVEAY 422


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 228 KHSTNTLKLSICFFRFASGDPF---AFSL 305
           K  T  L+  +C  RF +G+P+   AFS+
Sbjct: 452 KSDTTDLQDDVCIIRFIAGEPYQDIAFSI 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,222
Number of Sequences: 5004
Number of extensions: 34169
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)