Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6425
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0028 + 13893813-13893959,13894961-13895264,13896557-138967...    29   2.0  
07_03_0506 - 18861787-18861917,18862017-18862201,18862542-188626...    27   8.2  
06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143           27   8.2  
03_02_0491 + 8854438-8854657,8854897-8854942,8855268-8855307,885...    27   8.2  

>03_03_0028 +
           13893813-13893959,13894961-13895264,13896557-13896761,
           13897428-13897646,13897734-13897869,13899130-13899387,
           13899402-13899686
          Length = 517

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 158 VTRWGSG*IKILPEYNLTLYSTLKTLNKYFETLNLLLP 271
           + RW +G + ILPEY    Y  +K L+ + E  N L P
Sbjct: 290 IQRWDNGAVSILPEYMHAYY--IKLLSNFDEMENSLEP 325


>07_03_0506 -
           18861787-18861917,18862017-18862201,18862542-18862613,
           18863163-18863234,18863596-18863667,18864371-18864518,
           18864864-18865922,18866663-18866762
          Length = 612

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 252 LSICFFRFASGDPFAFSLRVVPITD 326
           LSICF     GDP   S+ V+ I D
Sbjct: 163 LSICFHSTGHGDPSILSIEVLQIDD 187


>06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143
          Length = 339

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 280 EAKRKKQIESFKVFVECFKC 221
           E KR+  +  +KVF +CF C
Sbjct: 153 ECKRRFNVRIWKVFTDCFNC 172


>03_02_0491 +
           8854438-8854657,8854897-8854942,8855268-8855307,
           8856025-8856090,8856237-8856318,8857036-8857595,
           8857681-8857771,8858300-8858316
          Length = 373

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 280 EAKRKKQIESFKVFVECFKC 221
           E KR+  +  +KVF +CF C
Sbjct: 228 ECKRRFNVRLWKVFTDCFNC 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,959,706
Number of Sequences: 37544
Number of extensions: 212408
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)