Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6425
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p...    28   4.2  
U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b ...    27   5.6  
U00063-9|AAK18957.1|  333|Caenorhabditis elegans Yeast glc seven...    27   9.8  

>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
            H05L14.2 protein.
          Length = 2162

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = -1

Query: 466  PGPPSRSTTPIYCQAAET*YLKCVEYSRRL*AFRLDYKSVTEMACSQSVIGTTRSEKANG 287
            P PP+  T PI  +A     LK  +       F  ++        ++ +     S KAN 
Sbjct: 1975 PSPPTSPTLPILSEARRQ--LKLTQ------KFSAEFDGDELRFFARDLFEWYNSTKANH 2026

Query: 286  SPEAKRKKQIESFKVFVECFKC 221
                  +KQ++ ++V ++C +C
Sbjct: 2027 KERKTAEKQLKEYEVALDCIEC 2048


>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
            protein H05L14.2 protein.
          Length = 2162

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = -1

Query: 466  PGPPSRSTTPIYCQAAET*YLKCVEYSRRL*AFRLDYKSVTEMACSQSVIGTTRSEKANG 287
            P PP+  T PI  +A     LK  +       F  ++        ++ +     S KAN 
Sbjct: 1975 PSPPTSPTLPILSEARRQ--LKLTQ------KFSAEFDGDELRFFARDLFEWYNSTKANH 2026

Query: 286  SPEAKRKKQIESFKVFVECFKC 221
                  +KQ++ ++V ++C +C
Sbjct: 2027 KERKTAEKQLKEYEVALDCIEC 2048


>U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b
           homolog protein 2 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 306 EAKKRTDHLKRSGRSKLRVSK-YLLSVLSVEYSVKLYSGRIF 184
           E K+R D+LK +  SK RV +  LL +++ E   K +S R F
Sbjct: 246 ELKRRIDYLKETEESKARVEREQLLKLINSEVD-KEFSDRSF 286


>U00063-9|AAK18957.1|  333|Caenorhabditis elegans Yeast glc
           seven-like phosphatasesprotein 2 protein.
          Length = 333

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 280 EAKRKKQIESFKVFVECFKC 221
           E KR+  I+ +K F +CF C
Sbjct: 138 ECKRRYNIKLWKTFTDCFNC 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,523,316
Number of Sequences: 27780
Number of extensions: 192353
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)