Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6425
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    27   0.082
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    27   0.082
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    27   0.082
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.1  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 0.082
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 374 LQSSRILHTF*VLCFRCLTIDGRCTSRGGARYPIRP 481
           L S R+L+ +    F+CL  +GRCT+ G     + P
Sbjct: 38  LHSDRLLNNY----FKCLMDEGRCTAEGNELKRVLP 69


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 0.082
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 374 LQSSRILHTF*VLCFRCLTIDGRCTSRGGARYPIRP 481
           L S R+L+ +    F+CL  +GRCT+ G     + P
Sbjct: 38  LHSDRLLNNY----FKCLMDEGRCTAEGNELKRVLP 69


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 0.082
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 374 LQSSRILHTF*VLCFRCLTIDGRCTSRGGARYPIRP 481
           L S R+L+ +    F+CL  +GRCT+ G     + P
Sbjct: 38  LHSDRLLNNY----FKCLMDEGRCTAEGNELKRVLP 69


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 472 WVPGPPSRSTTPIYCQAAET*YLK 401
           W+  P S S TP++ Q     YLK
Sbjct: 389 WIVPPISGSATPVFHQEMALYYLK 412


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 164 RWGSG*IKILPEYNLTLY 217
           RWG+G + + PE  L  Y
Sbjct: 147 RWGTGAVTVNPELKLLQY 164


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 194 PEYNLTLYSTLKTLNKYFETLNLLLP 271
           PEY L  +     LN Y+  +  +LP
Sbjct: 217 PEYKLDYFMEDVELNAYYYYMREMLP 242


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 194 PEYNLTLYSTLKTLNKYFETLNLLLP 271
           PEY L  +     LN Y+  +  +LP
Sbjct: 217 PEYKLDYFMEDVELNAYYYYMREMLP 242


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 464 GPPLEKYNAHLLSGSGNII 408
           GP ++ Y A LLS  G ++
Sbjct: 390 GPDVKAYGAGLLSAYGELL 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,876
Number of Sequences: 438
Number of extensions: 2388
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)