Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6424
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.6  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   2.1  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.7  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   6.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.6  

>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 228 AHSPPGVKWLLEPIDIYNVNAATHLK 305
           A  PP +K    P+DI N++AA  LK
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 249 KWLLEPIDIYNVNAATHLKIQVLRS*YSSTAASPFKPKRITASRQEWAGWWYL 407
           KW+ + I     N +T + + + +  +  T A PF     TAS QE   WW L
Sbjct: 694 KWIQQYITEGATNLSTDMSLALAKK-FLRTMAQPF-----TASDQEGISWWSL 740


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 219 GGRAHSPPGVKWLLEPIDIYN 281
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 487 YKALGQ-GQL*DNNSFHNYSLMTKYKTNQNNNYCNLS 594
           Y A+G+       N++H  S++ K+    N +YCNLS
Sbjct: 41  YVAIGEDASFVAQNAYHTTSVL-KHHNVSNTSYCNLS 76


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 571 FDLFC-ISSLMSNYETNYCLTADPDQELCRDGV 476
           FD+ C I S+ ++ + + CL    D  LC D +
Sbjct: 851 FDILCNIKSIATSLDIHICLGVSDDFVLCSDSL 883


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,487
Number of Sequences: 5004
Number of extensions: 55719
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)