Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6424
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81553-5|CAB04494.1|  382|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AM231685-1|CAJ77754.1|  375|Caenorhabditis elegans GDP-mannose 4...    29   4.6  
U80024-10|AAK18891.1|  297|Caenorhabditis elegans Serpentine rec...    28   8.0  

>Z81553-5|CAB04494.1|  382|Caenorhabditis elegans Hypothetical
           protein F56H6.5 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 147 SVQIDHLIGPLQPIRGKKNFIV*MGGRAHSPPGVKWL--LEPIDIYNVNAATHLKI 308
           + +I+HL G      G  +F +  G    S   +K +  +EP +IY++ A +H+K+
Sbjct: 72  TARIEHLYGNPVTHNGSASFSLHYGDMTDSSCLIKLISTIEPTEIYHLAAQSHVKV 127


>AM231685-1|CAJ77754.1|  375|Caenorhabditis elegans GDP-mannose
           4,6-dehydratase protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 147 SVQIDHLIGPLQPIRGKKNFIV*MGGRAHSPPGVKWL--LEPIDIYNVNAATHLKI 308
           + +I+HL G      G  +F +  G    S   +K +  +EP +IY++ A +H+K+
Sbjct: 65  TARIEHLYGNPVTHNGSASFSLHYGDMTDSSCLIKLISTIEPTEIYHLAAQSHVKV 120


>U80024-10|AAK18891.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 11 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 544 LMTKYKTNQNNNYCNLSYVVIKR-ALLNDFAAVKFLQIILRKSLTQLK 684
           + T+  +NQ+ N  NLS VVI    +L+ F  + F+ I   K +T+ +
Sbjct: 1   MSTQVSSNQSGNLMNLSAVVITSIGVLSSFLTI-FMNIYFIKKITKTR 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,581,510
Number of Sequences: 27780
Number of extensions: 313014
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)