Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6423
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    27   2.9  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    27   2.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.8  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    26   5.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.8  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    25   8.8  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    25   8.8  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.8  

>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 131 VICDNLKYTEGFTSGTQRVIHSVYATTRSILDTTNPNTFCSRVSRDE 271
           VICD L Y +GF         S+Y TT  ++    P   C + + ++
Sbjct: 83  VICDALNYIKGFRYQLYCESKSMY-TTHCVIHVAVPQDLCRKFNSNK 128


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 392 LQIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQPNRL 541
           +QI  E  +F  S+   I  T +   VP GP++ + IR  +I  + P RL
Sbjct: 209 VQIQQECTKFGKSSR--IRNTCVYGGVPRGPQIRDLIRGVEICIATPGRL 256


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +2

Query: 272  LRFFDVTNARTRRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRF 421
            L FF+  +    RGG+    F  ++  +QN     +A  + + D  +L +
Sbjct: 3826 LNFFETCSDSNERGGLESLFFKTHASNIQNFCTEVLANTHCEEDCLKLLY 3875


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 661 RKQLFAKRLYIKSKSERYFGRRRTGRSC 744
           +K LFA+  Y+  K E+Y  R +  R C
Sbjct: 129 QKTLFAQEKYVTRKGEKYLQRFQVLRPC 156


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +2

Query: 14   KRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEGFTSGTQRVIH 193
            KR+L+    N   VFN   +   +Q+   +   N +  +V CD   ++ GF     +++H
Sbjct: 1103 KRMLLDRKANVTNVFNTIGLPIHQQMAATIFLENLKEFSVYCD--AHSIGFL--VSKLLH 1158

Query: 194  SVY-----ATTRSILDT 229
              +      T RSI+D+
Sbjct: 1159 YEFYEVQLTTLRSIVDS 1175


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 290 TNARTRRG-GVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSATCIIDETGLV 463
           T  RT +  G    L +N+  + Q+ I R   P+Y+  D + L  R   T I +ET L+
Sbjct: 174 TKLRTVQSCGTNLSLLDNFY-YYQDHIDRIFDPQYIPSDQDILHCRIKTTGISEETFLL 231


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 449 ETGLVASVPDGPELYNPIRSSDIMKSQ 529
           E+GL+A+  + PE+   I S D +K Q
Sbjct: 488 ESGLLATFIEAPEMIPSISSPDFVKEQ 514


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 254 RVSRDE-LRFFDVTNARTRRGGVGDQLFNNYSGFLQNLIRRAVAPE--YLQIDTEELRFR 424
           R+S  E +RF+  T ARTR  G   Q F+N    +Q  I   V+ E  ++Q D  +  F 
Sbjct: 511 RISDPESIRFYSSTTARTRSAG---QPFDNE---VQTYIDTDVSSENPFIQFDHIDSSFV 564

Query: 425 NSATCIIDETGLVAS 469
             AT I  +T ++ S
Sbjct: 565 QLATYI--DTSMIPS 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,953
Number of Sequences: 5004
Number of extensions: 60507
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)