Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6422
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   1.5  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   3.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.5  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +2

Query: 272 FRFTVHNFKNLKDSMLSPPC-----YVRNLPWKIMVMPRQAPSPDRQQQKSLGFFLQC 430
           +R +    KN K   LSP       Y  N+  K  + P    +P+RQ+    GF ++C
Sbjct: 12  YRISPQILKNDKRIYLSPRTPIKNVYKNNIETKNQLSPFNIDTPNRQKILKDGFPIKC 69


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 536 LFYSKEKRLGLFSLHDVG 589
           +FY+ E  +GLF LH  G
Sbjct: 88  VFYASEIAIGLFFLHGRG 105


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
 Frame = +2

Query: 53  QHDSNVNQVVEMETQDVETITTEKTWNE----EMMKGPNGEVVMADVMKTQETASAEMPL 220
           + + + ++V +M    VE IT  K  +     ++  G +   V+A ++        +MP 
Sbjct: 484 KENDHADRVCDMALDMVEAITDLKDRSTGLHLQIRVGVHSGAVVAGIV------GLKMPR 537

Query: 221 ACLDAEMEDDEARSEATFR-FTVHNFKNLKDSMLSPPCYVR 340
            CL  +  +  +R EAT +   +H  ++ K+ +LSP   V+
Sbjct: 538 YCLFGDSVNTASRMEATSQAMQIHISQSTKE-LLSPSYRVK 577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,359
Number of Sequences: 438
Number of extensions: 3309
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)