Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6420
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 99 3e-22
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 52 6e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 51 2e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 48 1e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 48 1e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 48 2e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 46 7e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 45 9e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 45 1e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 7e-05
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 42 1e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 1e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 41 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 2e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 41 2e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 40 3e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 4e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 39 6e-04
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 38 0.001
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 38 0.002
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.008
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 36 0.008
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 35 0.010
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.010
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 35 0.013
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 35 0.013
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 34 0.023
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 33 0.054
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 32 0.094
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.50
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.66
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.5
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ... 27 2.0
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 3.5
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 3.5
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 26 6.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.2
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 6.2
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 26 6.2
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 8.2
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 8.2
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 99 bits (238), Expect = 3e-22
Identities = 43/92 (46%), Positives = 67/92 (72%)
Frame = +1
Query: 310 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYK 489
P +SVEG+I+ V+ VH EA EE +++ F++FG +KN+HLNLDRRTG++KGYAL+EY T +
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLE 62
Query: 490 QAASAREALDGADILGQAISVDWCFVKGPTKS 585
QA A + +L + + VD+ F++ P ++
Sbjct: 63 QAQKAVDE-KNLSLLDEKLEVDFAFLEPPERA 93
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 52.4 bits (120), Expect = 6e-08
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
L V+N+ ++ +EE++++ F FG I+ ++L D+ TG KG+A V Y A AR+ L
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 517 DG 522
DG
Sbjct: 264 DG 265
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/73 (32%), Positives = 42/73 (57%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
+++ N+ + E+DI FSEFGE +I+L D+ TG KG+A ++YE + A + +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 517 DGADILGQAISVD 555
+L + + VD
Sbjct: 93 TNVKLLDRLVRVD 105
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/72 (33%), Positives = 41/72 (56%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
L VSN+H +ED++ F FG+I+ +HL D + KG+ ++Y A +A E +
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYRNPISARNALEKM 400
Query: 517 DGADILGQAISV 552
+G D+ G+ + V
Sbjct: 401 NGFDLAGRNMRV 412
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 48.4 bits (110), Expect = 1e-06
Identities = 20/72 (27%), Positives = 40/72 (55%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
LF+ N+ E+D+++ F FG+++ +H+ +D++T KG+A +++ A A L
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 517 DGADILGQAISV 552
D G+ + V
Sbjct: 385 DAKPFQGRLLHV 396
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/80 (25%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 325 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHL--NLDRRTGFLKGYALVEYETYKQAA 498
+G + + N+ EA ++D+Q+ +G+++++ + DR +G+A E+ T ++AA
Sbjct: 719 KGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSA---RGFAFAEFVTAREAA 775
Query: 499 SAREALDGADILGQAISVDW 558
+A AL +LG+ + + +
Sbjct: 776 NAMRALKNTHLLGRHLVLQY 795
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/72 (27%), Positives = 42/72 (58%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
LFVS + QE+++Q FS+FG + ++ + + T +G+ + + T ++A SA + L
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 517 DGADILGQAISV 552
+ + G+ ++V
Sbjct: 163 NSQEFYGRVLNV 174
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +1
Query: 334 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREA 513
+++V N+ E EE + + F + G +K+ L +D +G KGY EY AASA
Sbjct: 6 VVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 514 LDGADILGQAISVDW 558
L+ D + + VD+
Sbjct: 66 LNNYDAGTRRLRVDF 80
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 45.2 bits (102), Expect = 9e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
+F+S + + +E DI+ +F+ +G I+ I + ++ TG GYA V +E + A +A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 517 DGADILGQAISVD 555
G + G+ I VD
Sbjct: 162 AGLMLNGRRIVVD 174
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 44.8 bits (101), Expect = 1e-05
Identities = 27/88 (30%), Positives = 44/88 (50%)
Frame = +1
Query: 295 SGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 474
+G G Q S +FV N+ A E+D+ F G+I++I L D ++G LKG+ V
Sbjct: 354 AGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVT 413
Query: 475 YETYKQAASAREALDGADILGQAISVDW 558
+ A E ++G I G+ +D+
Sbjct: 414 FSDIDSAKKCVE-MNGHFIAGRPCRLDF 440
Score = 42.3 bits (95), Expect = 7e-05
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = +1
Query: 301 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 480
T Q S E +FV + ++ + +F E+G I + +D ++G KGY V++E
Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
Query: 481 TYKQAASAREALDGADILGQAISVD 555
T + A +A A +I G+ +++D
Sbjct: 313 TPEAAKAAVAANGTKEIDGRMVNLD 337
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
LFV N+ + +++D+ N FS+ G IK+ + + TG +GY V + + A A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 517 DGADILGQAISVDW 558
+ G+ + +D+
Sbjct: 67 KNKKLHGRILRLDF 80
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/66 (31%), Positives = 38/66 (57%)
Frame = +1
Query: 373 EDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 552
+ ++ FS+FG+++ I + + G + G+A V + K A A +L+G +I G+ I+V
Sbjct: 122 QHLEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Query: 553 DWCFVK 570
DW K
Sbjct: 181 DWAVSK 186
Score = 32.3 bits (70), Expect = 0.071
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 7/126 (5%)
Frame = +1
Query: 154 MVNREIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQ-----R 318
+V + + E + G G E G S E N D + GDS + R
Sbjct: 214 IVTEDASADSESEEEVDGHSEGKELAGESEEEGSN---VDDVEDSGDSSSDKNSINHEIR 270
Query: 319 SVEGW--ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQ 492
EG +FV N+ E E+++ N F +FG + L D T G +++ K
Sbjct: 271 DNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKD 330
Query: 493 AASARE 510
+ E
Sbjct: 331 CQNCLE 336
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/72 (27%), Positives = 40/72 (55%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
+ V N+ +E I F +G I +I + + +++ KGY +EY + QAA+A + +
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 517 DGADILGQAISV 552
+ A++ G+ + V
Sbjct: 161 NNAELDGEELFV 172
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1
Query: 334 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 477
ILFV N+ +++ E +Q F G++ ++ + D+ +G KGYA VE+
Sbjct: 93 ILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
+FV V + EE+ +N F++FG + + L +D+ TG +G+ V YE + A A +
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQ 307
Query: 517 DGADILGQAISV 552
I G+ + V
Sbjct: 308 PYITIHGKPVEV 319
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
LFV N+ E + + FS G++ G KGY V Y++++ A +A EA+
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 517 DGADILGQAISVDWCF 564
+ ++ + I+V + F
Sbjct: 161 NNQFLMNKPITVSYAF 176
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +1
Query: 334 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREA 513
+LFV ++ Q+ED++ FS FG+I + + D+ TG YA +E++ + A
Sbjct: 245 VLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304
Query: 514 LDGADILGQAISVDW 558
+ I I VD+
Sbjct: 305 MQNVLIDDSRIHVDF 319
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/71 (25%), Positives = 38/71 (53%)
Frame = +1
Query: 334 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREA 513
+L+V + E+ ++ FS+FG + + ++ +R+TG K YA +E+E+ A E
Sbjct: 106 VLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
Query: 514 LDGADILGQAI 546
+ + G+ +
Sbjct: 166 MHNYLLYGKLL 176
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/76 (28%), Positives = 41/76 (53%)
Frame = +1
Query: 325 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASA 504
+G LF+ N+ +E +E ++ +FS FG I + + D + G KG+ V Y T ++A A
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKA 420
Query: 505 REALDGADILGQAISV 552
++ + G+ + V
Sbjct: 421 VTEMNQRMLAGKPLYV 436
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 334 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASARE 510
ILFV N+ E + D++ F + G+I+ + L TG KG+ V++ A E
Sbjct: 229 ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 38.3 bits (85), Expect = 0.001
Identities = 27/101 (26%), Positives = 50/101 (49%)
Frame = +1
Query: 250 RGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLN 429
RG R R ++ S P P+R+ G+ L V N+ E+ +D+++ + GE +
Sbjct: 73 RGERRRRENFRESAASKYPRPRRT--GFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAH 130
Query: 430 LDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 552
+ G +VE+ T + +A +L+G I GQA+++
Sbjct: 131 REN-----PGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTL 166
Score = 31.5 bits (68), Expect = 0.12
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
LFV + +A ED+ + F +G+I + L + G+ VE E + A
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIVNDF 57
Query: 517 DGADILGQAISVDWCFVKGPTKSHKKRR 600
G + +G I V+ P + ++RR
Sbjct: 58 QGKEFMGSRIVVE------PARGERRRR 79
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +1
Query: 343 VSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDG 522
V N+H + E+D+ + F F I+ I +N D R G +G V +ET + A A++ L
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPIRVI-MNYD-RAGRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 523 ADILGQAISV 552
++ G I +
Sbjct: 147 TNLKGSEIQI 156
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.5 bits (78), Expect = 0.008
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +1
Query: 310 PQRSVEGWILFVSNVHEEAQ--EEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 483
P ++ L+V N+ + + +++ FS FG I + L +G KGY V +
Sbjct: 375 PNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQ 434
Query: 484 YKQAASAREALDGADILGQAISVDWCFVKGPTKSHKKRR 600
+ A A++ L+G + + I V CF + KS + RR
Sbjct: 435 IEAAVRAKDTLNGMMVGKKRIFV--CFAE--RKSDRIRR 469
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 35.5 bits (78), Expect = 0.008
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 480
+FV N+ EA+EE + F + G I + + D +T KG+A ++++
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 35.1 bits (77), Expect = 0.010
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
+++SN+ E+ + FG++ + L + G KG+ E++ A A L
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 517 DGADILGQAISVDWCFV 567
DG D G + + V
Sbjct: 372 DGKDTYGNKLHAQFACV 388
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.1 bits (77), Expect = 0.010
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 301 TPGPQRSVEGWILFVSNVHEE--AQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 474
TP +++ LFV N+ + + ++ FS+FG IK+ L T KGY V
Sbjct: 409 TPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVS 468
Query: 475 YETYKQAASAREALDG 522
+ +A A L+G
Sbjct: 469 FSHPFEAVQAINTLNG 484
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.7 bits (76), Expect = 0.013
Identities = 18/80 (22%), Positives = 40/80 (50%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
++V N+ + ++ + F++ G + + + TG KG+ +V++E AAS+ E L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Query: 517 DGADILGQAISVDWCFVKGP 576
+G G+ + + + P
Sbjct: 341 NGYRYGGRPLQLSYAHYATP 360
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 34.7 bits (76), Expect = 0.013
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
++V N+ EE I FS+ GEI+ I + +DR T G+ VEY + A + + +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 517 DGADILGQAISVD 555
+ + I D
Sbjct: 94 SRTSLDERIIRAD 106
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.9 bits (74), Expect = 0.023
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 286 EGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 456
E D P V LF+ + +E +++ F FG ++++ LN + R GFLK
Sbjct: 391 ERDPTIPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLK 447
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 32.7 bits (71), Expect = 0.054
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 480
+FVSN+ E ++ F FGE+ ++ L L+ TG G + ++
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFD 143
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.9 bits (69), Expect = 0.094
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
+FV + E+D+Q F FG I NI + F KG V+Y A A +
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNI------KIPFGKGCGFVQYSEKSAAEKAINTM 352
Query: 517 DGADILGQAISVDW 558
GA + I + W
Sbjct: 353 QGALVGTSHIRLAW 366
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 29.5 bits (63), Expect = 0.50
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASA 504
L++ + E IQ ++ G+ + L +R TG GY VE+ + +A+SA
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA 150
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Frame = +1
Query: 274 SLAPEG--DSGTPGPQ-RSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRT 444
S+ P G + P PQ +FV + + EE+++ F FGEI + + +
Sbjct: 281 SMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGC 340
Query: 445 GFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 558
GF V++ + A A L G + I + W
Sbjct: 341 GF------VQFVNRQSAEIAINQLQGYPLGNSRIRLSW 372
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.1 bits (62), Expect = 0.66
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
LFV N+ + +E + FSE+ + + DR G +G+ V ++ Q A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREK 90
Query: 517 DG 522
+G
Sbjct: 91 NG 92
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +1
Query: 127 IQKNLKSTKMVNREIARLKEKARKRKGRG--FGNEAGGGSAAERGNRGRYDSLAPEGDSG 300
I N T + NR+ +R + +R G G GN + GS + N R + DS
Sbjct: 150 ITPNFTHTPISNRKSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRSIDSS 209
Query: 301 TPGPQ 315
P +
Sbjct: 210 NPSAE 214
>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 546 YRLAEYICAIQCFTCTSGLFISLVLN*SVAFEEACASVQIQMNIL 412
Y+ +++ + C S LF+SLV+N EA + Q +M L
Sbjct: 93 YKASQFYAQRNLYLCGSALFLSLVVNRYYLALEAMIAAQDKMQAL 137
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 214 FGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQF 393
F ++ +A ER + R S P P Q+ ++LF+SN+ E E DI+ F
Sbjct: 35 FESQDAARNALERQSTQRLISGNPISLDVVPEWQKP-SYYMLFISNIDPEVSENDIKYLF 93
Query: 394 SEFGEI 411
+ I
Sbjct: 94 QRYNFI 99
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/53 (20%), Positives = 24/53 (45%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQA 495
+++ + +E++ + FG++ + +D T KGY +E K A
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSA 350
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 235 GSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFG 405
G + NR L+ + D +P PQ+ G+ VSN+ +E ++ + + S FG
Sbjct: 4 GGSGSITNRSTLKPLSVD-DLRSPSPQKEYRGFRTSVSNIPQE--KKFVPSHLSHFG 57
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 352 VHEEAQEEDIQNQFSEFGE 408
+ EE +E+DI+N+ S F E
Sbjct: 72 IEEEEEEDDIENEASSFSE 90
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +1
Query: 337 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 516
L V+NV E +++ F +G++ + L+ + A+VE+ A A AL
Sbjct: 876 LGVTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEG------AVVEFLDIHDAGKASLAL 929
Query: 517 DGADILGQAISV 552
+G +I G+ + +
Sbjct: 930 EGHEIGGRLLHI 941
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -1
Query: 216 KTTTFSLTCLLLKSSDFPVHHL 151
K TT LLLKSSDF H L
Sbjct: 115 KCTTAEEVLLLLKSSDFVAHDL 136
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 8.2
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 370 EEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAIS 549
EED+ N EF +K L+R + YA+VE ++ + A E DGA+ A
Sbjct: 274 EEDLGN---EFDMVKLRQYQLERLRYY---YAVVECDSVRTAKVIYETCDGAEYETSANI 327
Query: 550 VDWCFV 567
D F+
Sbjct: 328 YDLRFI 333
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 161 TGKSLDLRRRHVSEKVVVLATKPVEAVLQNGV 256
T K+L + + + E+V V + VEA +Q+GV
Sbjct: 551 TMKALSIYEKDIVEEVAVELSSRVEAAVQSGV 582
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,724
Number of Sequences: 5004
Number of extensions: 48586
Number of successful extensions: 218
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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