Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6417
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   1.4  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    27   3.7  

>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect(2) = 1.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 536 NLSLWF*IPFIAFCLNFIYILISMY 462
           +L LWF   F+  C++ +YIL   +
Sbjct: 308 HLGLWFCFFFLTACISALYILFGAF 332



 Score = 21.0 bits (42), Expect(2) = 1.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 482 YILISMYFIFRMYVFASIV 426
           Y L S+Y IFR+ V   +V
Sbjct: 348 YTLHSIYKIFRIMVLCGVV 366


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 519 LNPFYCFLSKFYLYIDFNVLHI*NVCVCIHCFFLSKTSNGDFLTSSAL 376
           L P      K   +ID ++  +  + +C  C  LSK+++G F+   +L
Sbjct: 88  LKPILSIQPKLSFFIDSSLSRL--LLLCFGCLKLSKSTSGSFVQGDSL 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,629
Number of Sequences: 5004
Number of extensions: 42318
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)