Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6417
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565...    32   0.41 
10_01_0328 + 3591270-3592268                                           28   8.9  

>01_05_0251 + 19952882-19955459,19956209-19956245,19956370-19956586,
            19957063-19957221,19957397-19957516,19957609-19957719
          Length = 1073

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
 Frame = -2

Query: 533  LSLWF*IPFIAFCLNFIYILISMYFIFRM-YVFASIVFSYQKHRT-VTSSLVLRWRLFLV 360
            + LW+ +PF+++ +  +  + S+  +F++ Y    I F+  K+R  V+S LV+ + +F +
Sbjct: 901  ICLWYGLPFVSYGVVLVATVNSIGALFQLAYTATFIAFADAKNRVKVSSLLVMVFGVFAL 960

Query: 359  IIF 351
            I++
Sbjct: 961  IVY 963


>10_01_0328 + 3591270-3592268
          Length = 332

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 358 ITRKSRQRRTSEEVTVRCF 414
           + RK+R RRT + V ++CF
Sbjct: 48  VVRKARDRRTGDTVAIKCF 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,426
Number of Sequences: 37544
Number of extensions: 225437
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)