Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6416
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    28   1.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    26   6.3  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    26   6.3  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   8.4  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 634 SYQKSFGPPYRECNDRAVRPEVAKRASSTISSHRP 530
           S +K F  PY EC  +  RP + ++   T S+ RP
Sbjct: 18  SAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERP 52


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 101 IFEIELICGIIWYHEYFSH 157
           +++I  +C + W+H  FSH
Sbjct: 151 VYDIYTLCLVSWHHHVFSH 169


>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 608 WRPKGFLIRCSDVDSKKSFMVDSQDDSPRCGYD 706
           +RPKG ++  +  +S+ S  V S+DD     YD
Sbjct: 59  FRPKGIIVFSAHYESRGSVEVYSRDDENPLFYD 91


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 699 PHRGESSWLSTMKDFFESTSEHLIKNPL-GLHIGSVTIGQ 583
           P   ES  LS  +D +EST   L+K+ L G +   +T GQ
Sbjct: 69  PSAPESKNLSGQEDVYESTGPLLVKSILEGFNSCFITYGQ 108


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 325 LISIIFATFNFYFLSVTLS 269
           L+ I FA+  FYF+ +TLS
Sbjct: 155 LLLIFFASLKFYFVLITLS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,639
Number of Sequences: 5004
Number of extensions: 48970
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)