Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6414
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 163 9e-41
03_01_0290 + 2246791-2247027,2248089-2248346 163 9e-41
01_06_1794 - 39919363-39920025 31 0.69
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879... 31 0.91
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 31 0.91
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999 29 2.1
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 29 2.8
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 29 2.8
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 29 2.8
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 29 2.8
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 28 4.8
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 28 4.8
02_02_0658 + 12720873-12720906,12721201-12721664,12723069-127232... 28 4.8
09_01_0142 - 2103224-2103864,2104264-2104399 28 6.4
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 6.4
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 27 8.5
06_03_0201 - 17854232-17854681 27 8.5
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 27 8.5
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 8.5
01_01_0990 + 7847066-7847478,7847713-7848679 27 8.5
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 163 bits (396), Expect = 9e-41
Identities = 77/150 (51%), Positives = 104/150 (69%)
Frame = -3
Query: 542 MTNSKGYPRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPPKVYHGK 363
M G TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMP K YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 362 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 183
TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++F R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120
Query: 182 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLT 93
A G+ ++ KRQP PK +V G +T
Sbjct: 121 ARGEVISTKRQPQGPKPGFMVEGATLETVT 150
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 163 bits (396), Expect = 9e-41
Identities = 77/150 (51%), Positives = 103/150 (68%)
Frame = -3
Query: 542 MTNSKGYPRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPPKVYHGK 363
M G TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMP K YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 362 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 183
TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++ R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120
Query: 182 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLT 93
A G+ ++ KRQP PK +V G +T
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVT 150
>01_06_1794 - 39919363-39920025
Length = 220
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 221 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLTCA 87
R ++ ++ EA AAG + KRQP PP SG T A
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAA 71
>04_04_0823 +
28383798-28383864,28384475-28384877,28387388-28387932,
28387978-28388594
Length = 543
Score = 30.7 bits (66), Expect = 0.91
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = -2
Query: 417 QRQW-CS--SKGYAPQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC*ACQ 253
+++W C SK YA QS WK S++ C RCDC SR+D H+ C A
Sbjct: 117 EKKWKCDKCSKRYAVQS-DWKAHSKI---CGTREYRCDCGTLFSRRDSFITHRAFCDA-- 170
Query: 252 ALQVQTRLP 226
Q +RLP
Sbjct: 171 LAQESSRLP 179
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 30.7 bits (66), Expect = 0.91
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = -3
Query: 242 CRQDFLKRVKE----NERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLTC---AY 84
C+ F + KE N+ AK A + + + +P KAA + SGT++ TC AY
Sbjct: 57 CKPHFEQLFKETGSYNKSFQSPAKPASEKLTPELTRSPSKAARMFSGTQEKCATCSKTAY 116
Query: 83 PI 78
P+
Sbjct: 117 PL 118
>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
Length = 764
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Frame = -2
Query: 462 LHVHESVQSWRHCRHQRQWCS--------SKGYAPQSIPWKDRSRVQRDCSCSRCDCQQA 307
LH H+ R C+ R S + +A + + K ++ CSCS+ D +
Sbjct: 232 LHTHQVTDENRQCKSARGMLSHLDNYTGLNSDHAGKKL--KGHLSIEEPCSCSKDDTDSS 289
Query: 306 CSRKDYTEAHQY 271
CS D A Y
Sbjct: 290 CSLADEHHARHY 301
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 29.1 bits (62), Expect = 2.8
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = -2
Query: 429 HCRH--QRQW-CS--SKGYAPQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQY 271
+CR +++W C SK YA QS WK S+ C RCDC SR+D H+
Sbjct: 115 YCRKHGEKKWRCDKCSKRYAVQS-DWKAHSKT---CGTREYRCDCGTLFSRRDSFITHRA 170
Query: 270 PC*ACQALQVQTRLP 226
C A Q R+P
Sbjct: 171 FCDA--LAQENARMP 183
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 29.1 bits (62), Expect = 2.8
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = -3
Query: 362 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 183
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 409 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 462
Query: 182 AAGKTVNLKRQPAP-PKAAHIVSGTEKPVLTCAYPIRIRXVKS 57
+Q +P P + IVS + P + PIR KS
Sbjct: 463 GGTLLRQHPQQVSPAPGRSTIVSSSNAPRIA---PIRRSIGKS 502
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = -2
Query: 417 QRQW-CS--SKGYAPQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQAL 247
+++W C SK YA QS WK ++ RCDC SR+D H+ C A
Sbjct: 121 EKKWKCDKCSKKYAVQS-DWKAHTKTCGSREY-RCDCGTLFSRRDSFITHRAFCDALAEE 178
Query: 246 QVQTRLP*ESQRE*EATEGSQGCRQDRQP 160
+ R + + T S G + P
Sbjct: 179 SAKARAAPPPPADEDGTSASAGAPPPQAP 207
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = -2
Query: 417 QRQW-CS--SKGYAPQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 265
+++W C SK YA QS WK +++ C RCDC SRKD H+ C
Sbjct: 139 EKKWKCDRCSKKYAVQS-DWKAHTKI---CGTKEYRCDCGTIFSRKDSFITHRAFC 190
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 402 SSKGYAPQSIPWKDRSRVQRDC--SCSRCDCQQACSRKDYTE 283
+S G + Q P + R + Q D SC RC C+++ K Y E
Sbjct: 436 TSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKSKCLKLYCE 477
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 348 QRDCSCSRCDCQQACSRKDYTEAHQYPC 265
Q C C C C + RKD A +Y C
Sbjct: 391 QDTCGCMMCKCIYSDQRKDIVLADKYTC 418
>02_02_0658 +
12720873-12720906,12721201-12721664,12723069-12723227,
12723308-12723424,12723570-12723721,12724594-12724685,
12724787-12725464,12725551-12725803,12725804-12725888,
12725969-12726037,12726489-12726668,12726989-12726994,
12727526-12727624
Length = 795
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 587 GRIGYRAPPRFTGSKMTNSKGYPR 516
G+ G P R +GS MTN YPR
Sbjct: 534 GKFGGTGPTRVSGSLMTNFGAYPR 557
>09_01_0142 - 2103224-2103864,2104264-2104399
Length = 258
Score = 27.9 bits (59), Expect = 6.4
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = -3
Query: 362 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 183
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 124 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 177
Query: 182 AAGKTVNLKRQPAP-PKAAHIVSGTEKPVLTCAYPIRIRXVKS 57
+ +Q +P P +VS + P + PIR KS
Sbjct: 178 GSMLLRQHPQQVSPAPGRPTVVSSSNAPRIA---PIRRSIGKS 217
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -3
Query: 257 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 150
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 392 GMPPKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKC 240
G P G T VY+V AH+ GVIV+ + I V+ ++H C
Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVSGSEDRSAKIWKDGICVQSIEHPGC 187
>06_03_0201 - 17854232-17854681
Length = 149
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 414 RQWCSSKGYAPQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC*A-CQALQ 244
RQ CS P S+PW+ R+Q SC +Q C ++ A QY C A C +Q
Sbjct: 47 RQQCS-----PMSLPWEQSRRLQLS-SCQ--VMRQQCCQQMRLMAQQYHCQAICTMVQ 96
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -2
Query: 435 WRHCRHQRQWCSSKGYAPQSIPWKDRSRVQRD 340
W H H QW YA + W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -1
Query: 292 LYRSASISVLSMSSTPSADKTSLRESKRM 206
+Y+SA++ V + SS P+ADK + + ++M
Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = -2
Query: 417 QRQW-CS--SKGYAPQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 265
+++W C SK YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 98 EKKWKCDKCSKRYAVQS-DWKAHSKT---CGTREYRCDCGTLFSRRDSFITHRAFC 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,345
Number of Sequences: 37544
Number of extensions: 364049
Number of successful extensions: 1253
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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