Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6413
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.16 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    29   0.48 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   2.6  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   2.6  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   4.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   7.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 179 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 280
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 103 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNRI 2
           Y    ES + D+ +  SH+ A +I Q  R+G R+
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKRL 96


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 257 FPCVPTQSFVDPIHLKICQYPHGGL 183
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 357 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 494
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 441 WPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMFES 548
           WP D+ T    FG+     D  D + D+ +Y M ++
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
 Frame = +3

Query: 228 DKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN---AAATTAGDYALRARVSNNGSVSWIK 398
           +K+L+     +    WL+S +R W   + +++     A    +  L  ++ +   + + K
Sbjct: 415 EKKLAKRVKNYRLKDWLISRQRFWGTPIPMVHCETCGAVPVPESELPVKLPDLDKI-YEK 473

Query: 399 RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIY 533
               ++P+S  L+ W     TC    G     +D MD  +D   Y
Sbjct: 474 G---TSPLS-NLETWMK--TTCPKCHGPATRETDTMDTFVDSSWY 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,594
Number of Sequences: 5004
Number of extensions: 50362
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)