Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6412
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1175 + 26702744-26704507 29 2.4
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 29 2.4
04_01_0034 - 401208-402923 29 2.4
07_01_0562 + 4175711-4175863,4175944-4176393 29 3.2
06_01_1068 + 8715714-8716799,8716899-8717159 29 3.2
03_06_0033 - 31186076-31186189,31186274-31186396,31186524-311867... 29 4.2
01_02_0013 + 10162478-10163581 29 4.2
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 28 5.6
12_02_0640 - 21447470-21448309 28 7.4
12_02_0635 - 21430245-21431156 28 7.4
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 28 7.4
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 28 7.4
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 28 7.4
12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320... 27 9.8
10_08_0304 - 16640937-16642877 27 9.8
>12_02_1175 + 26702744-26704507
Length = 587
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 346 SPPPQQENRRVLITS*RRTKKRRLPGVLRTPVFPLVRS*TVPSLEGNRMFWNR 504
SPPP + TS RT RRL +L +P++ L R T+P + +R W++
Sbjct: 312 SPPPLPVSSSSKPTSAPRTFARRLVDLLHSPLY-LPRRLTIPDIAAHR--WSK 361
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +3
Query: 234 ERFSYNEDLSSTMDSPVSSQDERDIEVNVVSGASTPDITSSPTREQKSPYYELKKDKEEK 413
ER SYN D P D+ ++E++ D +S + +++ E ++++EE+
Sbjct: 470 ERISYNTYFEVLSDEPKEDDDDTEVELDDEEDDENDDDCNSASCDEEDEEEEEEREEEEE 529
>04_01_0034 - 401208-402923
Length = 571
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +3
Query: 276 SPVSSQDERDIEVNVVSG-----ASTPDITSSPTREQKSPYY 386
SP SS D RDI VVSG +STP +T+ P ++ P Y
Sbjct: 369 SPTSSTDVRDI---VVSGERKITSSTPAVTAPPATVEEDPEY 407
>07_01_0562 + 4175711-4175863,4175944-4176393
Length = 200
Score = 29.1 bits (62), Expect = 3.2
Identities = 28/82 (34%), Positives = 40/82 (48%)
Frame = +3
Query: 363 REQKSPYYELKKDKEEKATGSAPYTSFSISSILNRSEPRRESNVLESALAAHHFGNANDA 542
R Q P E++ KEE AT S+P + S ++ R++P S L LA G A +
Sbjct: 47 RAQAEP--EVEPTKEEAATSSSPTPTPSPAAAAPRAKP-AASTGLWDVLA--FSGPAPER 101
Query: 543 MLSRLGLISQWSALAGRYRRPG 608
+ RL ++ SALA R G
Sbjct: 102 INGRLAMVGFVSALAVEASRGG 123
>06_01_1068 + 8715714-8716799,8716899-8717159
Length = 448
Score = 29.1 bits (62), Expect = 3.2
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Frame = +3
Query: 270 MDSPVSSQDERDIEVNVVS--GASTPDI---TSSPTR-------EQKSPYYELKKDKEEK 413
+D+ SS + DI+ + S A+TPD +S P +Q + L + +
Sbjct: 277 LDTETSSGEMLDIDFDCGSPQAATTPDEKVGSSGPAAADDDAQLQQSNLALSLNYEAIIE 336
Query: 414 ATGSAPYTSFSISSI-LNRSEPRRESNVLESALAAHHFGNANDAMLSRLGLISQWSALAG 590
+ G++P+T + L+ S PR S V +A G A+ RLG+ A
Sbjct: 337 SWGTSPWTDGERPHVKLDDSWPRDYSGVWMAAAGVFGHGGEEQALTPRLGMDGGREARVS 396
Query: 591 RYR 599
RYR
Sbjct: 397 RYR 399
>03_06_0033 -
31186076-31186189,31186274-31186396,31186524-31186718,
31186805-31186930,31187024-31187186,31187270-31187405,
31187557-31187916,31188026-31188124,31188222-31188489
Length = 527
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 255 DLSSTMDSPVSSQDERDIEVNVVSGASTPDITSSPTREQKS 377
D S +DS S D+ D + VSG PD+T++ T S
Sbjct: 98 DSVSILDSADSEDDDLDNDFASVSGDPLPDVTATATSTSTS 138
>01_02_0013 + 10162478-10163581
Length = 367
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 372 KSPYYELKKDKEEKATGSAPYTSFSISSILNRSEPRRESNVLESALAAHHFGNANDAMLS 551
K+PYY+L +E++A + + ++ R + L A+ H G + D LS
Sbjct: 103 KTPYYDLGGREEDEAVAAVLRRVEGLEHVVRCHAMFRRNESLRVAVFEHMNGGSLDRALS 162
Query: 552 RLG 560
R G
Sbjct: 163 RRG 165
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 310 RSTWSPERARPTSPPPQQENRR 375
R + SP A PT PPPQQ+ ++
Sbjct: 53 RKSSSPSPAPPTPPPPQQQQQQ 74
>12_02_0640 - 21447470-21448309
Length = 279
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 247 TMKI*APQWIRRCPLKTNAT*R-STWSPERARPTSPPP 357
T K PQ RR P +T R + SP R RP +PPP
Sbjct: 195 TTKKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPP 232
>12_02_0635 - 21430245-21431156
Length = 303
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 247 TMKI*APQWIRRCPLKTNAT*R-STWSPERARPTSPPP 357
T K PQ RR P +T R + SP R RP +PPP
Sbjct: 192 TTKKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPP 229
>10_08_0825 +
20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 219 PPVNKAHISKNSEELFHIHKNNPSEHCPLEI 127
PP K + NSE+L I+ +NP H E+
Sbjct: 79 PPHEKISLPSNSEDLVSIYGSNPQGHAVDEL 109
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 322 SPERARPTSPPPQQENRR 375
+P + RP SPPPQQ+ R
Sbjct: 74 TPPQTRPPSPPPQQQQPR 91
>05_03_0369 -
13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 632 RCQYQEAGTRPPVPSSQGAPLRDQTQSR 549
RC+ +E G RP P+++G P Q R
Sbjct: 458 RCRRREGGRRPDSPTTEGRPPISQKDDR 485
>12_01_0404 +
3200787-3200898,3201016-3201091,3201442-3201544,
3202109-3202160,3202239-3202333,3202703-3202768,
3202910-3203419,3203598-3203756,3204022-3204321,
3204867-3205193,3205548-3205754,3205978-3206076,
3206193-3206251,3206294-3206639
Length = 836
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 643 VLEVVASTRKLAPGLRYRPARALHCEIKPNLDSIASLAFP 524
V++++ L PG RY P R ++ L S + + FP
Sbjct: 529 VVQIIRGVAHLFPGTRYLPLRLRLVQMLNELSSCSQMFFP 568
>10_08_0304 - 16640937-16642877
Length = 646
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 310 RSTWSPERARPTSPPPQQENR 372
RS S E RP PPPQQ+ R
Sbjct: 619 RSRRSRELTRPPPPPPQQQQR 639
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,638,061
Number of Sequences: 37544
Number of extensions: 360985
Number of successful extensions: 1321
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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