Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6411
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 28 1.5
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 2.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.0
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 2.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.0
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 27 2.7
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 26 4.7
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 8.1
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 8.1
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 257 DNPPPPVEEPGQAMDKPPEPKPNLIDKLVIIFAETKTHSPRFTLP 391
D PPP ++ + KP E ++D +FAE K + T P
Sbjct: 855 DGEPPPSDKSSKEKVKPREIDIRIVDFANCVFAEDKELLAKATCP 899
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 236 MAEKTDQDNPPPPVE-EPGQAMDKPP 310
M K + PPPP+ EPG+ M PP
Sbjct: 212 MHHKPGEHMPPPPMHHEPGEHMPPPP 237
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 236 MAEKTDQDNPPPPVE-EPGQAMDKPP 310
M + + PPPP+ EPG+ M PP
Sbjct: 225 MHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 236 MAEKTDQDNPPPPVE-EPGQAMDKPP 310
M + + PPPP+ EPG+ M PP
Sbjct: 238 MHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 236 MAEKTDQDNPPPPVE-EPGQAMDKPP 310
M + + PPPP+ EPG+ M PP
Sbjct: 251 MHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 236 MAEKTDQDNPPPPVE-EPGQAMDKPP 310
M + + PPPP+ EPG+ M PP
Sbjct: 264 MHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 236 MAEKTDQDNPPPPVE-EPGQAMDKPP 310
M + + PPPP+ EPG+ M PP
Sbjct: 277 MHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 236 MAEKTDQDNPPPPVE-EPGQAMDKPP 310
M + + PPPP+ EPG+ M PP
Sbjct: 290 MHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 236 MAEKTDQDNPPPPVE-EPGQAMDKPP 310
M + + PPPP+ EPG+ M PP
Sbjct: 303 MHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 236 MAEKTDQDNPPPPVE-EPGQAMDKPP 310
M + + PPPP+ EPG+ M PP
Sbjct: 316 MHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +2
Query: 260 NPPPPVEEPG-QAMDKPPEPKP 322
NPPPP PG + +PP P P
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPP 29
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 410 PNELYRRLLPAMLFVLTFVTVMTMLLIYM 496
P+ Y+RL+ +LF T++T+LL+++
Sbjct: 954 PSNFYKRLIALLLFCWICSTLVTVLLVFV 982
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 263 PPPPVEEPGQAMDKPPEPKP 322
PPPP PG A PP P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 266 PPPVEEPGQAMDKPPEPKPNLIDKLVII 349
P P E+P + +KPP+ K + ++K I
Sbjct: 493 PVPKEKPSEKSEKPPKKKGSKLEKFCCI 520
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 269 PPVEEPGQAMDKPPEPKPNLIDKLVIIFAETKTHS 373
PP+E P Q KP + + DK + + K H+
Sbjct: 90 PPIETPSQFWRKPLQYVSKVTDKCKSFYEKEKNHA 124
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 305 PPEPKPNLIDKLVIIFAETKTHSPRFTLPAFMKAPPNELYRR 430
PP+ L+DKLV F E++ +P F + P Y R
Sbjct: 440 PPQTCSRLLDKLVGEFIESECINPTFIIGHPQMMSPLAKYHR 481
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 173 ISGLCPFFVFFLMQGIENKVIMAEKTDQDNPPP 271
I L P FVF I+ +V+ ++ +N PP
Sbjct: 438 IQNLPPLFVFNARSVIDKEVVPEQEKSAENQPP 470
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,290
Number of Sequences: 5004
Number of extensions: 57926
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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