Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6411
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81533-8|CAB04332.1| 917|Caenorhabditis elegans Hypothetical pr... 35 0.066
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 32 0.35
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 32 0.35
AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical... 31 0.82
Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical pr... 29 3.3
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL132949-17|CAB70108.2| 338|Caenorhabditis elegans Hypothetical... 29 4.4
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 29 4.4
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z70780-13|CAD18872.2| 368|Caenorhabditis elegans Hypothetical p... 28 5.8
Z70780-12|CAA94820.2| 329|Caenorhabditis elegans Hypothetical p... 28 5.8
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 28 5.8
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 28 5.8
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 28 7.6
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 28 7.6
>Z81533-8|CAB04332.1| 917|Caenorhabditis elegans Hypothetical
protein F36G9.13 protein.
Length = 917
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 182 LCPFFVFFLMQGIENKVIMAEKTDQDNPPPPVEEPGQAMDKPPEPKPNLIDKLV 343
LC +F FF + + + A+ + + PPPP P K PE P L+ K V
Sbjct: 821 LCIYFSFFFFRFVARREQSAQHSVKVPPPPPPPVPTAPPAKTPETAPLLVPKPV 874
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 209 MQGIENKVIMAEKTDQDNPPPPVEEPGQAMDKPPEPKP 322
++G+E K + A++ D P P ++ PP PKP
Sbjct: 374 LEGLEVKALEAQEASDDRPSAPTPIRDSSLPPPPPPKP 411
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 209 MQGIENKVIMAEKTDQDNPPPPVEEPGQAMDKPPEPKP 322
++G+E K + A++ D P P ++ PP PKP
Sbjct: 374 LEGLEVKALEAQEASDDRPSAPTPIRDSSLPPPPPPKP 411
>AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical
protein Y69A2AR.14 protein.
Length = 555
Score = 31.1 bits (67), Expect = 0.82
Identities = 19/56 (33%), Positives = 21/56 (37%)
Frame = +2
Query: 245 KTDQDNPPPPVEEPGQAMDKPPEPKPNLIDKLVIIFAETKTHSPRFTLPAFMKAPP 412
KT PP P P A PP+P N + I T PR T K PP
Sbjct: 256 KTSPTKPPTPTSRPTSAPTIPPQPSAN-STRAPDIGKTLSTQPPRRTPQPHPKPPP 310
>Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical
protein C36H8.1 protein.
Length = 418
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 251 DQDNPPPPVEEPGQAMDKPPEPKPNLIDKLVIIFAETKTHSPRFTLPAFMKAPPNEL 421
+Q PPPP ++K PEP P ++++ A + +P P+ APP++L
Sbjct: 192 EQAAPPPPPAPMPVPVEKAPEPVPAPVEQIAPPPAPVQDPAPAPVEPS-DPAPPSKL 247
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 263 PPPPVEEPGQAMDKPPEPKPNLIDKLVIIFAETKTHSPRFTLPAFMKAPPNELYRRL 433
PP P EP +A + P P+P + +K I T SP+ + P APP R+
Sbjct: 196 PPEPPAEPQEAAET-PAPEPLVPEKKPKIEDAPTTSSPKKSTPT--SAPPTRASARV 249
>AL132949-17|CAB70108.2| 338|Caenorhabditis elegans Hypothetical
protein Y53F4B.19 protein.
Length = 338
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 242 EKTDQDNPPPPVEEPGQAMDKPPEPKPNLIDKLVIIF 352
EK ++ NPP P++ D P P P ID ++F
Sbjct: 31 EKYERKNPPIPLDNEYNYQDVTPSPFPFHIDAPSLVF 67
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 257 DNPPP-PVEEPGQAMDKPPEPKP-NLIDKLVIIFAETKTHSPRFTLPAFMKAPP 412
D PPP P+ P ++ PP P P + L + T SP F P + PP
Sbjct: 151 DQPPPTPIPTPVPILEPPPPPPPVPPLSPLYKVLEIPATPSPIFVAP--LPPPP 202
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 218 IENKVIMAEKTDQDNPPPPVEEPGQAMDKPPEPKP 322
+ KV MA +PPPP P + + P P P
Sbjct: 382 VPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVP 416
>Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 251 DQDNPPPPVEEPGQAMDKPPEPKPNLIDKLVI-IFAETKTHSPRFTLPAFMKAPPNE 418
DQDNPPP + + G + P+L+D V F T P F + F PP E
Sbjct: 574 DQDNPPPKIVQ-GYKFN---IFYPDLLDMTVAPRFGLTSCEDPDFAIIRFKAGPPYE 626
>Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 251 DQDNPPPPVEEPGQAMDKPPEPKPNLIDKLVI-IFAETKTHSPRFTLPAFMKAPPNE 418
DQDNPPP + + G + P+L+D V F T P F + F PP E
Sbjct: 574 DQDNPPPKIVQ-GYKFN---IFYPDLLDMTVAPRFGLTSCEDPDFAIIRFKAGPPYE 626
>Z70780-13|CAD18872.2| 368|Caenorhabditis elegans Hypothetical
protein F46B6.3b protein.
Length = 368
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 218 IENKVIMAEKTDQDNPPPPVEEPGQAMDKPPEPKP 322
++ K E+ +QD P P ++ + + KPP P P
Sbjct: 262 LDEKKKKHEEREQDGPRVPRDKKKERLAKPPRPSP 296
>Z70780-12|CAA94820.2| 329|Caenorhabditis elegans Hypothetical
protein F46B6.3a protein.
Length = 329
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 218 IENKVIMAEKTDQDNPPPPVEEPGQAMDKPPEPKP 322
++ K E+ +QD P P ++ + + KPP P P
Sbjct: 262 LDEKKKKHEEREQDGPRVPRDKKKERLAKPPRPSP 296
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 218 IENKVIMAEKTDQDNPPPPVEEPGQAMDKPPEPKP 322
+ KV MA +PPPP P + + P P P
Sbjct: 382 VPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVP 416
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 218 IENKVIMAEKTDQDNPPPPVEEPGQAMDKPPEPKP 322
+ KV MA +PPPP P + + P P P
Sbjct: 382 VPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVP 416
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 215 GIENKVIMAEKTDQDNPPPPVEEP 286
G E +V +AE + N PPPVE P
Sbjct: 9 GAEAEVKVAEDVPEKNVPPPVEPP 32
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 215 GIENKVIMAEKTDQDNPPPPVEEP 286
G E +V +AE + N PPPVE P
Sbjct: 9 GAEAEVKVAEDVPEKNVPPPVEPP 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,198,524
Number of Sequences: 27780
Number of extensions: 349889
Number of successful extensions: 1521
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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