Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6411
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +2

Query: 182 LCPFFVFFLMQGIENKVIMAEKTDQDNPPPPVEEPGQAMDKPPE 313
           +C  FVF  +  +E  ++     D D PP P   P       P+
Sbjct: 313 VCTVFVFMAL--MEYCLVNIVLGDSDTPPKPAPPPPPPSSSGPD 354


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 239  AEKTDQDNPPPPVEEPGQA 295
            A +  Q  PPPP    GQA
Sbjct: 1349 AWRQQQPPPPPPPPSSGQA 1367


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 557 ARIGQGSAALIAYVRQLHLTARSKPQDVVTTPT 655
           AR  QGS  L+      + T R     V+TT T
Sbjct: 759 ARSPQGSQGLLQCATSNYSTTRWPATSVITTTT 791


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,358
Number of Sequences: 438
Number of extensions: 4069
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)