Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6410
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   2.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   2.6  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   3.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   4.6  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   6.1  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.1  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    24   8.0  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    24   8.0  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    24   8.0  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 102  QGGTLAHAYFPVYGGDAHFDDAEM--WSINSRRGTNLFQVAAHEFGHSLGLSHSDVR 266
            Q    AH +  +Y GD   ++ +M   +  +  G     +A   FG  LG+++  VR
Sbjct: 1437 QSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFG--LGINYMGVR 1491


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 102  QGGTLAHAYFPVYGGDAHFDDAEM--WSINSRRGTNLFQVAAHEFGHSLGLSHSDVR 266
            Q    AH +  +Y GD   ++ +M   +  +  G     +A   FG  LG+++  VR
Sbjct: 1437 QSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFG--LGINYMGVR 1491


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 213 VAAHEFGHSLGLSH 254
           V AHE GH LGL H
Sbjct: 226 VVAHEIGHILGLIH 239


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 112 VPPWTIKRISVTVLAFLKPNFYVDLTGSLLCES 14
           VP  TIK I  T L +   N +VD    +LC S
Sbjct: 688 VPEETIKNILFTTLEYFLTNDWVDNHLIILCAS 720


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 230 KLMRCYLEKISSSTGIDGPHLSVIKMGI 147
           KL+  YL+K+++  GID P +   K+ +
Sbjct: 374 KLVHNYLDKLANFQGIDVPLIQKTKIAV 401


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 213 VAAHEFGHSLGLSHSDVRSALMAPFYRGYDPAFQLDQDDVQ 335
           V+ +E G++L     + +     P Y  Y P+F++D++ VQ
Sbjct: 161 VSIYETGNTLLSQKEEYKPE--KPIYGDYMPSFEVDEEKVQ 199


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 220 AATWKRLVPLRELMDHISA 164
           A +W+++  L+EL +HIS+
Sbjct: 67  ATSWEKVKSLKELYEHISS 85


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 121 TLISRCMEVMPILMTLRCGPSIPVEELIFSR 213
           T+I     ++ IL ++ CG + PV+  +F+R
Sbjct: 788 TMIEIICLLIGILASMICGAAYPVQAAVFAR 818


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 87  ILLMVQGGTLAHAYFPVYGGDAHFDDAEMWSINSRR--GTNLFQVAAHEFGHSLGLSHSD 260
           +LLM +  +L H       GD + DD ++ S ++ +   + L      E  H   L H D
Sbjct: 79  VLLMSKATSLCHGIDRSVVGDKYIDDDDLRSFSTGQILPSQLRLAQITEMIHIASLLHDD 138

Query: 261 V 263
           V
Sbjct: 139 V 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,924
Number of Sequences: 5004
Number of extensions: 36277
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)