Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6410
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 73 7e-14
02_05_0697 - 30999644-31000762 71 5e-13
06_01_0940 + 7235801-7236916 64 3e-11
10_08_0900 - 21436508-21437521 64 5e-11
09_01_0155 - 2301903-2302151,2302334-2302491,2302651-2302819,230... 29 1.1
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 28 2.5
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978... 28 3.3
01_06_0106 - 26516930-26517349,26517474-26517905,26517981-265180... 27 4.4
12_01_0974 - 9808192-9808455,9809023-9809172,9810892-9811488 27 5.8
01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511 27 7.7
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 73.3 bits (172), Expect = 7e-14
Identities = 39/88 (44%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Frame = +3
Query: 108 GTLAHAYFPVYGGDAHFDDAEMWSINSRRGT-----NLFQVAAHEFGHSLGLSHSDVRSA 272
G LAH+ P G H A W++N T +L VAAHE GH LGL HS RS+
Sbjct: 399 GVLAHSSMPEKSGQIHLHAAHRWTVNLAADTAPLAVDLESVAAHEIGHVLGLDHSSSRSS 458
Query: 273 LMAPFYRGYDPAFQLDQDDVQGIQSLYG 356
+M PF + +L DDV GIQ LYG
Sbjct: 459 MMYPFISCRERKVRLTTDDVHGIQELYG 486
Score = 62.1 bits (144), Expect = 2e-10
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Frame = +3
Query: 117 AHAYFPVYGGDAHFDDAEMWSIN-----SRRGTNLFQVAAHEFGHSLGLSHSDVRSALMA 281
AHA P G FD AE W+++ S +L VA HE GH+LGL HS S++M
Sbjct: 143 AHATGPE-DGRIDFDAAERWAVDLAADASPAAVDLETVATHEIGHALGLDHSTSESSVMY 201
Query: 282 PFYRGYDPAFQLDQDDVQGIQSLYG 356
P+ + +L DDV+GIQ LYG
Sbjct: 202 PYVGTRERKVRLTVDDVEGIQELYG 226
Score = 60.5 bits (140), Expect = 5e-10
Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Frame = +3
Query: 114 LAHAYFPVYGGDAHFDDAEMWSINSRRGT---------NLFQVAAHEFGHSLGLSHSDVR 266
LAHA+ P G H A W++ + G +L VA HE GH+LGL HS
Sbjct: 762 LAHAH-PPQDGRIHLHAARKWAVTNVAGAGGDAPPLAVDLESVAVHEIGHALGLGHSSSE 820
Query: 267 SALMAPFYRGYDPAFQLDQDDVQGIQSLYGHK 362
S++M YR Y L DDV+G+Q LYG K
Sbjct: 821 SSMM---YRHYRGKVSLTDDDVKGVQELYGAK 849
Score = 31.9 bits (69), Expect = 0.21
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Frame = +2
Query: 2 LVPLTF----TQKRSGQVHIEIR---FEKGEHGDGDPFDGP 103
++P++F T+ + +IR + GEHGDG PFDGP
Sbjct: 98 VIPVSFAEITTEDDAAAAEADIRVGFYGAGEHGDGHPFDGP 138
>02_05_0697 - 30999644-31000762
Length = 372
Score = 70.5 bits (165), Expect = 5e-13
Identities = 44/91 (48%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Frame = +3
Query: 108 GTLAHAYFPVYGGDAHFDDAEMW------SINSRRGT--NLFQVAAHEFGHSLGLSHSDV 263
GTLAHA+ P G H D AE W S +S GT +L VA HE GH LGL HS V
Sbjct: 234 GTLAHAFSPT-DGRFHLDAAEAWVASGDVSTSSSFGTAVDLESVAVHEIGHLLGLGHSSV 292
Query: 264 RSALMAPFYRGYDPAFQLDQDDVQGIQSLYG 356
++M P R L+ DDV GIQSLYG
Sbjct: 293 PDSIMYPTIRTGTRKVDLESDDVLGIQSLYG 323
Score = 33.9 bits (74), Expect = 0.051
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 11 LTFTQKRSGQ-VHIEIRFEKGEHGDGDPFDGP 103
L FT+ S I I F G+HGDG+ FDGP
Sbjct: 201 LQFTEVSSASNADITIGFYSGDHGDGEAFDGP 232
>06_01_0940 + 7235801-7236916
Length = 371
Score = 64.5 bits (150), Expect = 3e-11
Identities = 37/91 (40%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = +3
Query: 108 GTLAHAYFPVYGGDAHFDDAEMW-------SINSRRGTNLFQVAAHEFGHSLGLSHSDVR 266
GTLAHA+ P G H D +E W +S +L VA HE GH LGL HS
Sbjct: 234 GTLAHAFSPT-NGRLHLDASEAWVAGGDVTRASSNAAVDLESVAVHEIGHILGLGHSSAA 292
Query: 267 SALMAPFYRGYDPAFQLDQDDVQGIQSLYGH 359
++M P L DDV GIQ LYG+
Sbjct: 293 DSIMFPTLTSRTKKVNLATDDVAGIQGLYGN 323
Score = 33.9 bits (74), Expect = 0.051
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 11 LTFTQKRSG-QVHIEIRFEKGEHGDGDPFDGP 103
L FT+ S I I F G+HGDG+ FDGP
Sbjct: 201 LNFTEAASAADADITIGFYGGDHGDGEAFDGP 232
>10_08_0900 - 21436508-21437521
Length = 337
Score = 63.7 bits (148), Expect = 5e-11
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Frame = +3
Query: 108 GTLAHAYFPVYGGDAHFDDAEMWSIN-----SRRGTNLFQVAAHEFGHSLGLSHSDVRSA 272
G L HA+ P G H D +E W+++ + +L VA HE GH LGL HS A
Sbjct: 209 GILGHAFSPK-NGRLHLDASEHWAVDFDVDATASAIDLESVATHEIGHVLGLGHSASPRA 267
Query: 273 LMAPFYRGYDPAFQLDQDDVQGIQSLYGHKTQ 368
+M P + + +L DDV+G+Q+LYG Q
Sbjct: 268 VMYPSIKPREKKVRLTVDDVEGVQALYGSNPQ 299
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 5 VPLTFTQKRSGQV-HIEIRFEKGEHGDGDPFDGP 103
+P+ F + + I++ F G HGDG PFDGP
Sbjct: 174 IPVGFVETDDYEAADIKVGFYAGNHGDGVPFDGP 207
>09_01_0155 -
2301903-2302151,2302334-2302491,2302651-2302819,
2303796-2304839,2305792-2306075,2306318-2307333,
2307937-2308085
Length = 1022
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 218 CYLEKISSSTGIDGPHLSVIKM 153
C L ISSSTG+DG HL + ++
Sbjct: 379 CNLNVISSSTGLDGQHLVLFRV 400
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 169 SASSKWASP-PYTGK*AWARVPPWTIKR 89
SA + WA P PYTG+ AR P W +R
Sbjct: 58 SAVAGWAPPGPYTGRDPAARKPAWLRQR 85
>12_01_0971 -
9781887-9781924,9782036-9782247,9782327-9784114,
9784630-9785432
Length = 946
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 317 ELESRIVTTIKRR--HQCGSYIAV*ETQRVTKLMRCYLEKISSSTGIDGPHLSVIKMGIT 144
EL++R++ +RR +Q +I+ + + E++ GIDGP +IK +T
Sbjct: 123 ELKNRVMEEDQRRKRNQIDDFISEPSVVEIDPRLPALYEEVERLVGIDGPREKIIKWIMT 182
>01_06_0106 -
26516930-26517349,26517474-26517905,26517981-26518058,
26518352-26518499,26518662-26518765,26518838-26518912,
26519195-26519261,26519352-26519356
Length = 442
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 198 TNLFQVAAHEFGHSLGLSHSDVRSALMAPFYRGYDPA--FQLDQDDVQGI 341
+ +F +A HEFGH++ + ++ +A F P L+ D +Q +
Sbjct: 66 STVFSIAFHEFGHAVAAASEGIQIEYVAVFVAALFPGALIALNCDQLQNL 115
>12_01_0974 - 9808192-9808455,9809023-9809172,9810892-9811488
Length = 336
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 317 ELESRIVTTIKRR--HQCGSYIAV*ETQRVTKLMRCYLEKISSSTGIDGPHLSVIK 156
EL++R++ +RR +Q +I+ + + E++ GIDGP ++K
Sbjct: 123 ELKNRVMEEDQRRKRYQIDDFISEPSMVEIDPRLLALYEEVERLVGIDGPREKIVK 178
>01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511
Length = 383
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 183 NSRRGTNLFQVAAHEFGHSLGLSHSDVR 266
N RG + F VA H++G +H D+R
Sbjct: 140 NRTRGADHFLVACHDWGSYTTTAHGDLR 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,576,849
Number of Sequences: 37544
Number of extensions: 280441
Number of successful extensions: 761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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