Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6409
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    70   2e-13
SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...    26   3.7  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   5.0  

>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
 Frame = +1

Query: 187 VQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLPTEFEK------VKLDXXXXXXXXXXXXX 348
           V YC  C++P+EYCE+     KCK+WL+ + P  ++K      +  D             
Sbjct: 12  VLYCDVCTLPVEYCEFEGTLKKCKEWLKSSHPDVYDKLYGEQDLSKDLENTLNVSGTKDS 71

Query: 349 XXXXXXXMLKSKKK----EDVPKL---VQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKF 507
                   L  ++K    E+  ++   V +    R K+K VT V GL  F I+ K AAK 
Sbjct: 72  NAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQGLDAFGIETKKAAKM 131

Query: 508 FGTKFACGSSV----PGDDEIVIQG 570
              KFA G+SV       DEIV+QG
Sbjct: 132 LANKFATGASVTKTADKKDEIVVQG 156


>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 554 SSSPGTEDPQANFVPKNFAATFRSISKV 471
           +  PG+++  A F  KN+  TF  ++K+
Sbjct: 69  NQEPGSDEEIAQFCQKNYGVTFPVLAKI 96


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 488 RSISKVLNPDTTVTDFFLPRGARDTCTNLGTSSFFLDFN 372
           RS  +V+NP+ +VTD   P G  +     G SSF    N
Sbjct: 223 RSRKRVVNPECSVTD--TPYGKLNNVIGEGASSFIRVIN 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,578
Number of Sequences: 5004
Number of extensions: 37156
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)