Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6409
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513...    57   1e-08
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629...    31   0.94 
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142...    31   0.94 
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367...    29   2.9  
10_06_0116 + 10945231-10945501,10946018-10946241,10946329-109467...    27   8.8  

>01_01_0671 -
           5137787-5137843,5138420-5138503,5138595-5138662,
           5138854-5138935,5139282-5139346,5139504-5139747
          Length = 199

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +1

Query: 178 PIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLP 282
           P++V YCG C +P EYCE+ P++++CK WL  N P
Sbjct: 8   PVRVLYCGVCGLPAEYCEFGPDFERCKPWLRANAP 42



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 24/52 (46%), Positives = 33/52 (63%)
 Frame = +1

Query: 385 KKEDVPKLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSV 540
           KK+D  ++V + +  R K+K VTVV GL  F + L  A+K  G KFA G+SV
Sbjct: 101 KKKDKQEVV-IEKIVRNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASV 151


>11_06_0180 +
           20962420-20962528,20962618-20962699,20962831-20962948,
           20963024-20963062,20963181-20963343,20963706-20963921,
           20964039-20964116,20964244-20964500,20964544-20964575,
           20964815-20965197,20965262-20965831,20966250-20966343,
           20966365-20966541,20966761-20966963,20968244-20968301,
           20969126-20969381,20969553-20969789
          Length = 1023

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 223 YCEYYPEYDKCKQWLEKNLPTEFEKVKL 306
           + E  PEY++ K+WLE++LP    K K+
Sbjct: 740 WLEASPEYEQEKRWLEQDLPVSCGKFKI 767


>11_06_0155 -
           20712601-20713553,20713618-20714000,20714240-20714271,
           20714315-20714571,20714699-20714724,20714894-20715081,
           20715302-20715595,20715714-20715752,20715827-20715944,
           20716076-20716157,20716610-20716668,20717156-20717221,
           20717358-20717447,20718142-20718236
          Length = 893

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 223 YCEYYPEYDKCKQWLEKNLPTEFEKVKL 306
           + E  PEY++ K+WLE++LP    K K+
Sbjct: 839 WLEASPEYEQEKRWLEQDLPVSCGKFKI 866


>02_04_0233 -
           21135743-21135867,21135970-21136340,21136486-21136757,
           21137289-21137397,21137846-21138247,21138376-21138419,
           21138539-21138759,21140163-21140274,21140620-21140754
          Length = 596

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +1

Query: 403 KLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSV------PGDDEIVI 564
           + +Q+    R   K +T +SGL  F +D    A     KFAC ++        G  E+++
Sbjct: 506 RTIQIMTERRQGNKKMTRLSGLECFLMDPDSLASELQKKFACSTTTAELPGKKGQHEVLV 565

Query: 565 QG 570
           QG
Sbjct: 566 QG 567


>10_06_0116 +
           10945231-10945501,10946018-10946241,10946329-10946725,
           10946804-10946893,10947118-10947239,10947390-10947428
          Length = 380

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 193 YCGNCSMPIEYCEYYPEYDKCKQWLEKNL-PT 285
           YCG+    +EYC+ Y    K  ++L++NL PT
Sbjct: 202 YCGSRLEKLEYCQIY-RVPKLSKFLDRNLIPT 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,947,277
Number of Sequences: 37544
Number of extensions: 215952
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)