Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6409
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-17|CAB55081.1|  192|Caenorhabditis elegans Hypothetical...   128   2e-30
Z22179-17|CAA80171.2|  691|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z22173-3|CAA80127.2|  691|Caenorhabditis elegans Hypothetical pr...    28   4.5  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    28   4.5  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    28   4.5  
AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b prot...    27   7.9  

>AL117202-17|CAB55081.1|  192|Caenorhabditis elegans Hypothetical
           protein Y47D3A.21 protein.
          Length = 192

 Score =  128 bits (310), Expect = 2e-30
 Identities = 71/154 (46%), Positives = 89/154 (57%), Gaps = 10/154 (6%)
 Frame = +1

Query: 139 RDLSMGPREGVTYPIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLPTEFEKVKL---- 306
           + L+ GP +GV+YP+K+ YCG CSMP EYC+Y  + D C+ W  +N P   E +++    
Sbjct: 10  QSLAPGPIDGVSYPLKMVYCGQCSMPPEYCDYSGQTDVCRAWATQNAPELLEGLEISDEP 69

Query: 307 ----DXXXXXXXXXXXXXXXXXXXXMLKS--KKKEDVPKLVQVSRAPRGKKKSVTVVSGL 468
               D                       S  KKK   P+ V + R PRGKK SVTV+ GL
Sbjct: 70  AADGDEKKKQKRGGKGSKTGAAAAQAAASGGKKKGGGPQKVTLQREPRGKK-SVTVIKGL 128

Query: 469 STFDIDLKVAAKFFGTKFACGSSVPGDDEIVIQG 570
           +TFDIDLKVA+K F  KFACGSSV G DEIVIQG
Sbjct: 129 ATFDIDLKVASKLFAQKFACGSSVTGADEIVIQG 162



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +2

Query: 566 RGDVKEDLFDIIPEK 610
           +GDVK+DL D+IPEK
Sbjct: 161 QGDVKDDLLDLIPEK 175


>Z22179-17|CAA80171.2|  691|Caenorhabditis elegans Hypothetical
           protein F58A4.11 protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 575 HHP*ITISSSPGTEDPQANFVPKNFAATFRSISKVLNPDTTVT 447
           H P    + +P ++   A+F P+N A +F S  +  +PD   T
Sbjct: 50  HSPTDQRTETPTSDSGNASFSPENVATSFESSDRDASPDNLST 92


>Z22173-3|CAA80127.2|  691|Caenorhabditis elegans Hypothetical
           protein F58A4.11 protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 575 HHP*ITISSSPGTEDPQANFVPKNFAATFRSISKVLNPDTTVT 447
           H P    + +P ++   A+F P+N A +F S  +  +PD   T
Sbjct: 50  HSPTDQRTETPTSDSGNASFSPENVATSFESSDRDASPDNLST 92


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 229 EYYPEYDKCKQWLEKNLPTEFEKVKLD 309
           E   E+ KCK+ +E+    +FEK+K D
Sbjct: 367 ELIEEFKKCKKGVEEEFEKKFEKIKED 393


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 229 EYYPEYDKCKQWLEKNLPTEFEKVKLD 309
           E   E+ KCK+ +E+    +FEK+K D
Sbjct: 367 ELIEEFKKCKKGVEEEFEKKFEKIKED 393


>AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b protein
           protein 46 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 360 WQGYVKIQEERRCSQVSAGISCSSGQEEISHSRVWI 467
           + G VK+  E  C+QV+  ISC    E +S  RV+I
Sbjct: 59  FSGSVKV--EITCNQVNGSISCLFEDEHMSVGRVYI 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,505,790
Number of Sequences: 27780
Number of extensions: 199502
Number of successful extensions: 542
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)