Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6407
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    33   0.048
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    30   0.34 
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   9.5  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   9.5  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 32.7 bits (71), Expect = 0.048
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 373 RIFEFFSPLPEKSDDNLEKFMVSGKNNGKRSRGRNPM 263
           R F+FF+P PE SD NLEK           S+    M
Sbjct: 239 REFDFFTPTPEPSDKNLEKLKNGASKQASESQSLKNM 275


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -2

Query: 255 PTISAPLWIPTISDAIHIAENNG 187
           P+ SAP+++PT S  +++++NNG
Sbjct: 67  PSASAPIFVPTSSVQLNVSKNNG 89


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 496 LYSNRYFSLSFYIYLCTTQVSVLIIILLMTIQTKLSIICLKR 371
           L+ N  F  SF +   T+QVSV + +     Q   ++ CL R
Sbjct: 494 LHPNDSFYKSFAVECSTSQVSVDMFLFSSQYQDVATLSCLPR 535


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 562 YVIMLRYKFVFCNQWAAYSIEVDF 633
           +VI L YKF+   +W +Y  ++DF
Sbjct: 478 FVIWLSYKFIKKTKWVSYE-DMDF 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,595
Number of Sequences: 5004
Number of extensions: 58479
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)