Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6407
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97593-3|AAB52876.1|  250|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical ...    28   6.7  

>U97593-3|AAB52876.1|  250|Caenorhabditis elegans Hypothetical
           protein C46G7.2 protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 246 SAPLWIPTISDAIHIAENNGRWRNIIHTKIMRWYRPSD 133
           + P++ PT+ D  + + ++ RWR+  H +I + Y+P D
Sbjct: 102 TVPVYKPTVHDWYNKSYSDARWRD-THREINKPYKPLD 138


>AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical
           protein H37A05.1 protein.
          Length = 823

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 274 RNPMR*SDHFRTTVDTHNLRCHTHR*EQWKMAKYHPHKNN-EMVSTLRHEECDLRRRITI 98
           R  ++ SD  RT   T     H+H  +   M K H HK+N E++ +LR E  D+ RRI +
Sbjct: 202 RTDIKKSDGKRTR-KTPRPFVHSHS-QCSPMEKKHFHKSNDEILRSLRRETHDMDRRIPL 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,547,140
Number of Sequences: 27780
Number of extensions: 332075
Number of successful extensions: 801
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)