Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6405
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1450 + 26620178-26620456,26622122-26622775 31 1.1
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 30 1.9
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 30 2.5
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638 29 3.3
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 3.3
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 4.4
12_02_1197 + 26915933-26916298 28 7.6
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 28 7.6
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 28 7.6
02_05_0769 + 31616644-31616875,31616980-31617203,31617308-316174... 28 7.6
>07_03_1450 + 26620178-26620456,26622122-26622775
Length = 310
Score = 31.1 bits (67), Expect = 1.1
Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 12/125 (9%)
Frame = +3
Query: 135 YSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARSSCHQLEQLDAM 314
+S PPPAY H + A A TV G F+ A S QL + +++
Sbjct: 148 FSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALS-----EDNRQLRRRNSL 202
Query: 315 LDKELALEGRAYGNDAL------------VADEPLPLANAHALHGVPPMLSSVLPETSQP 458
L ELA + Y ND + P A A A H +P S L E P
Sbjct: 203 LLSELAHMKKLY-NDIIYFLQNHVAPVTTTTTTPSSTAMAAAQHHLPAAASCRLMELDSP 261
Query: 459 SSSRP 473
S P
Sbjct: 262 DHSPP 266
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 30.3 bits (65), Expect = 1.9
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Frame = +2
Query: 131 SIQHIRTAT-GLSAQGVNF-GPDREDCSTNSGRFLLHLGNLYIGFELGSSSFIMPSARAA 304
+IQ +R G S G F G S+ SG+ L + G ++ SSS PS +A
Sbjct: 66 AIQEVRGVDEGGSGHGTGFDGLPLVSPSSKSGKLTSKLRQVTNGLKMKSSSRKAPSPQAQ 125
Query: 305 GCNARQRTRFGRQSLRK*CPGSG*AFATSKCPRFAWSTAHAVFS 436
R R R R G F T+K W+ F+
Sbjct: 126 QSAKRVRKRLDRTKSSAAVALKGLQFVTAKVGNDGWAAVEKRFN 169
>02_01_0597 -
4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 520 TKTNCRKLTTIRMTHQTRV--MRVLSPTVLLKRTTNLKRLDRCSNCLFSLTLMSWRALS 690
+ T C+ L + H+ + +++ ++ TT+ K +D CSNC S +L A+S
Sbjct: 297 SSTGCKDLEAMIKEHEKFIGDQKIIMQSLSKDVTTSKKLVDDCSNCQLSASLRPHDAVS 355
>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
Length = 504
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 520 TKTNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCSNCLFSLTL 669
T T + ++ +R+T R MR+L+ + + + L RC CL L L
Sbjct: 330 TTTVVKGVSVVRLTEAVRTMRILAINMFVLNLAKVIDLMRCFPCLEKLYL 379
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 378 PLPLANAHA-LHGVPPMLSSVLPETSQPSSSRPSLFKDDALN 500
P P A +H H P +L+S+LP PSSS PSL +LN
Sbjct: 2522 PSPYATSHGNQHQRPSILASLLPFVL-PSSSNPSLTAPLSLN 2562
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 105 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 191
M P PP +++ PPP + H +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 75 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 185
H+ D+ A T T+ PPSE + PPPA +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281
>12_02_1197 + 26915933-26916298
Length = 121
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 154 GGSDVLYTSEGGYSGFIVIVAIESGW 77
GG DVL + GG +++VA ES W
Sbjct: 3 GGEDVLVVAPGGGRDALLLVAQESAW 28
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 372 DEPLPLANAHALHGVPPMLSSVLPE---TSQPSSSRPSLFKDDALNHAESKINED 527
+E P +N ++ +PP +PE T +P SS ++KD+ +S N+D
Sbjct: 265 NEVSPASNDSSIDVLPPREGLEVPESVATVKPGSSTADVYKDEVEEDMDSDKNKD 319
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 98 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 18
C H+ WL + HH++ ILF+K L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430
>02_05_0769 +
31616644-31616875,31616980-31617203,31617308-31617426,
31617528-31617684,31617928-31618029,31618111-31618230,
31618761-31618855,31619900-31619984,31620090-31620180,
31620534-31620618,31620702-31620806,31621019-31621894,
31622016-31622124,31622266-31622414,31622518-31622737
Length = 922
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 781 APKI*RENVSPWGRRYDAPPRSSYGLLVVAKKAPA 677
A + +E V W R YD PP + L + A++A A
Sbjct: 205 ADRFGKEQVHEWRRSYDIPPPNGESLEMCAERAVA 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,279,989
Number of Sequences: 37544
Number of extensions: 474509
Number of successful extensions: 1592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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