Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6404
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    36   0.006
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    36   0.007
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    34   0.017
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    34   0.017
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    33   0.040
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    32   0.091
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    30   0.37 
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   2.0  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   4.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.5  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.0  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   7.9  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    25   7.9  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   7.9  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   7.9  

>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 20/48 (41%), Positives = 29/48 (60%)
 Frame = +1

Query: 163 WRTYILILYCPATIVFVYVWFMNESARWLLSKGRRDEAIDVLKRAAKI 306
           WR  I I      I  V V F++ES R+L+S G+ DEAI V+ + A++
Sbjct: 178 WRVSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVMCKNAEL 225


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 21/56 (37%), Positives = 32/56 (57%)
 Frame = +1

Query: 160 NWRTYILILYCPATIVFVYVWFMNESARWLLSKGRRDEAIDVLKRAAKINNLDPRS 327
           +WRT   I       + V V F+ ES R+L+ KGR +EA+ ++ + A+   LDP S
Sbjct: 177 SWRTSFGINILWGIFLMVGVLFLPESPRYLIYKGRDEEALRIMCQTAE---LDPES 229


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +1

Query: 160 NWRTYILILYCPATIVFVYVWFMNESARWLLSKGRRDEAIDVLKRAAKIN 309
           +WRT   I      ++ V V F+ ES R+L+ KGR +EA+ ++   A+++
Sbjct: 177 SWRTSFGINMLWGILLMVGVLFLPESPRYLIYKGRDEEALRIMCNMAELS 226


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 18/58 (31%), Positives = 35/58 (60%)
 Frame = +1

Query: 163 WRTYILILYCPATIVFVYVWFMNESARWLLSKGRRDEAIDVLKRAAKINNLDPRSLDL 336
           WR  + I      I+F+ + F+ ES R+L++ G+ +EA+D++ +    NN+ PR  ++
Sbjct: 178 WRVSMGINLLWGIIMFIGISFLPESPRYLIAIGKDEEALDIMCK----NNVLPREHEI 231


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 163 WRTYILILYCPATIVFVYVWFMNESARWLLSKGRRDEAIDVLKRAAKI 306
           WR  I I      I  + + F+ ES R+L+  G+ +EA+ VL  +A++
Sbjct: 182 WRVSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLSESAEL 229


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 163 WRTYILILYCPATIVFVYVWFMNESARWLLSKGRRDEAIDVLKRAA 300
           WR  I I      ++F  + F+ ES R+L  KGR +E + +L R A
Sbjct: 180 WRVPIGINLLWGILMFFGMLFLPESPRYLAVKGRNEECMKILTRNA 225


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 163 WRTYILILYCPATIVFVYVWFMNESARWLLSKGRRDEAIDVL 288
           WR  I I      I  V + F+ ES R+L++ G+ DEA+ ++
Sbjct: 148 WRISIGINLLWGIITLVGIIFLPESPRYLIAIGKDDEALKIM 189


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
 Frame = +1

Query: 10   VTRERYLTFIVLFIVVE---LVGLKQRVIVSAMCNMTFVIGVVLIALLAWAVNNWRTYIL 180
            VTRE     + +   V+   L G  Q+VIV A+ +   ++GV  I L ++ ++      L
Sbjct: 1162 VTREEIKGTVAVVCEVDGYLLSGQGQKVIVRALEDEDHLVGVSFIDLGSYTLSAKCLRNL 1221

Query: 181  ILYCPATIVFVYVWFMNESARW-LLSKGRRDEAIDV 285
            +L+        +V F  E  R  L SKG+  EA++V
Sbjct: 1222 LLFGDVRQNVTFVGFAEEPYRMTLFSKGQ--EALNV 1255


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 479 YYGFSINSVSLSSNRYVSLHA--RDVSGDTC 565
           Y  F INS  L  N Y+++ A  R++ GD C
Sbjct: 59  YRDFMINSYRLEPNEYLTVTACRRNLVGDVC 89


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 40  VLFIVVELVGLKQRVIVSAMCNMTFVIGVVLIALLAWAVNN 162
           +L  ++E++ L   V  +AMC +T +IG+ LI  + +   N
Sbjct: 780 LLLELIEVI-LNVNVSTTAMCLLTLLIGIYLILQVVFIYTN 819


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
 Frame = +1

Query: 163 WRTYILILYCPATIVFVYVWFMN--ESARWLLSKGRRDEAIDVLKRAAKINNLDPRSLDL 336
           WR ++  +     ++F   + ++  ES ++ L+KG   +A++ + + A+IN     +L +
Sbjct: 250 WRYFLFTMGGMTLLMFAARFLVSVYESPKFYLAKGDDYKAVETIHKIARING-KTCTLTV 308

Query: 337 DALG--DPLLKPQNQTGDKKSQMYKAIRSG 420
           + L   D   + ++   D KS   K++  G
Sbjct: 309 EELYAIDRQEQEESDLDDSKSSDAKSVTQG 338


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 110 VMLHMADTMTRCLRPTSSTTINRTMKV 30
           ++LH+AD M  C   T S    +T+K+
Sbjct: 501 ILLHLADQMNACSLQTKSRESIKTLKL 527


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 282 RTETRRQDQQSRPEESGSRCARRSPAETAEPNRRQKVSDVQGHQI 416
           R + ++ D +  P E+GS    +  + T  P  RQKV  V+G Q+
Sbjct: 7   RWQGKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVI-VKGGQL 50


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 300 QDQQSRPEESGSRCARRSPAETAEPNRRQKVSDVQGHQIWY 422
           ++++S   +S S  AR++  E A  NR Q +  V GH  WY
Sbjct: 69  ENEESAVNKSVSGKARQAHTE-AMLNRLQYIGAVTGHVGWY 108


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = +1

Query: 115 VIGVVLIALLAWAVNNWRTYILILYCPATIVFVYVWFMNESARWLL 252
           ++G  ++   +W    W+ ++L++   A ++ +  +FM E++ W L
Sbjct: 228 LLGAAMVVAKSW---RWQFWLLMMIS-ALVLVIITFFMPETSEWHL 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,071
Number of Sequences: 5004
Number of extensions: 58246
Number of successful extensions: 177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)