Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6403
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    31   0.14 
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   3.9  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   6.8  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 24/86 (27%), Positives = 41/86 (47%)
 Frame = -1

Query: 407 KLNRLKNW*VGFWVATLASCF*N*VKF*KEYPSKMLINPMFFFKPQPMYNSLFWYKTFFY 228
           KL  LK   V + ++ L+  + N  K  +     ML   +    P+ +   +++Y  FF 
Sbjct: 662 KLKDLKT--VDYSISVLSYVWNNSGKVMQGIIKSMLSRTLELISPEELQRLIYYYFEFFT 719

Query: 227 SHHFMYYIYKVVIVNHLYVLQLITNL 150
           +    YY+ K V  + LY+L LI +L
Sbjct: 720 TTGGEYYLKKEV-QHSLYILSLIVSL 744


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 230 YSHHFMYYIYKVVIVN-HLYVLQ 165
           + HH +YYIY  +++N + Y +Q
Sbjct: 378 FEHHDVYYIYNAIVLNDYAYWIQ 400


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 308 KMLINP-MFFFKPQPMYNSLFWYKTFFYSHHFMYYIYKVVIVNHLYVLQLITNLEFDL 138
           K L N  +FFF+P   + S F      +  HF+ + + ++  N   V    TNL+ D+
Sbjct: 209 KQLANKFLFFFRPDVSFPSYFLGSLIAHEIHFLPWDFNMLCSNS--VQSAHTNLQPDI 264


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 251 FWYKTFFYSHHFMYYIYKVVIVNHLYVLQLITNL 150
           F + + F+S   ++ +YK V+    ++  L+ NL
Sbjct: 17  FTFSSIFFSSLILFLVYKSVLSKLFFIKYLMLNL 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,307
Number of Sequences: 5004
Number of extensions: 47705
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)