Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6403
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 32 0.32
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 31 0.42
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078... 28 3.9
01_06_0614 + 30621495-30621670,30621817-30622036,30623848-306242... 28 3.9
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 28 5.2
05_05_0147 + 22715144-22715444,22716245-22716407,22716484-227165... 28 5.2
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322... 27 6.8
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044... 27 9.0
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 31.9 bits (69), Expect = 0.32
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 275 PQPMYNSLFWYKTFFYSHHFMYYIYKVVIVNHLYV 171
P+P+ N L + F+YSHH +Y ++IV+ Y+
Sbjct: 558 PRPL-NRLTGFNAFWYSHHCFVIVYALLIVHGYYL 591
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 275 PQPMYNSLFWYKTFFYSHHFMYYIYKVVIVNHLYVLQLI 159
P P +N L + F+YSHH + +Y ++I H Y L L+
Sbjct: 616 PSP-FNRLAGFNAFWYSHHLLGIVYALLIA-HGYFLFLV 652
>01_06_1258 +
35806557-35806932,35807517-35807679,35807789-35807837,
35807943-35808866,35808954-35809049,35809142-35809257,
35809345-35809447,35809570-35809658,35809750-35809900,
35809995-35810141,35810238-35810366,35810451-35810529,
35810616-35810725
Length = 843
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = -1
Query: 275 PQPMYNSLFWYKTFFYSHHFMYYIYKVVIVNHLYV 171
P P+++ L + F+Y+HH + Y +++V+ ++
Sbjct: 461 PSPLHH-LAGFNAFWYAHHLLVLAYVLLVVHSYFI 494
>01_06_0614 +
30621495-30621670,30621817-30622036,30623848-30624270,
30624523-30624906,30624991-30625086,30625161-30625276,
30625431-30625598,30625685-30625844,30625999-30626196,
30626304-30626432,30626595-30626673,30627010-30627119
Length = 752
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 275 PQPMYNSLFWYKTFFYSHHFMYYIYKVVIVN 183
P+P ++ L + F+YSHH +Y +IV+
Sbjct: 358 PRP-FDKLTGFNAFWYSHHLFIIVYIALIVH 387
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 275 PQPMYNSLFWYKTFFYSHHFMYYIYKVVIVNHLYVLQLIT 156
P P+ L + F+YSHH + +Y +++V H + + L+T
Sbjct: 642 PFPL-GHLAGFNAFWYSHHLLIVVYLLLLV-HGWFMFLVT 679
>05_05_0147 +
22715144-22715444,22716245-22716407,22716484-22716532,
22716626-22716739,22716812-22717234,22717307-22717693,
22717777-22717872,22717978-22718093,22718137-22718272,
22718392-22718480,22718586-22718736,22719057-22719185,
22719276-22719354,22719435-22719544
Length = 780
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 275 PQPMYNSLFWYKTFFYSHHFMYYIYKVVIVNHLYVLQL 162
P P+++ L + F+Y+HH + Y +++V H Y + L
Sbjct: 436 PSPLHH-LAGFNAFWYAHHLLVIAY-ILLVLHSYFIFL 471
>05_06_0156 -
26031463-26031572,26031961-26032039,26032133-26032261,
26032362-26032559,26032741-26032900,26032980-26033147,
26033290-26033405,26033491-26033586,26033675-26034058,
26035150-26035572,26037202-26037315,26037969-26038017,
26038103-26038262,26038345-26039014
Length = 951
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -1
Query: 275 PQPMYNSLFWYKTFFYSHHFMYYIYKVVIVN--HLYVLQL 162
P+P ++ L + F+YSHH +Y ++++ LY++++
Sbjct: 557 PKP-FDKLTGFNAFWYSHHLFIIVYISLVIHGEWLYLIRI 595
>04_04_1584 +
34601927-34602144,34603324-34603510,34604239-34604496,
34604866-34604965,34608523-34608639,34608704-34608804,
34609035-34610141
Length = 695
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 251 FWYKTFFYSHHFMYYIYKVVIVNHLYVL 168
F FFY+ H M Y Y ++ N VL
Sbjct: 622 FCIARFFYTRHLMGYYYDQIVDNRFVVL 649
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,099
Number of Sequences: 37544
Number of extensions: 253047
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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