Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6403
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70212-6|CAA94166.1|  336|Caenorhabditis elegans Hypothetical pr...    31   0.65 
AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    28   3.5  
Z99710-12|CAI79158.1|  333|Caenorhabditis elegans Hypothetical p...    27   8.0  
AL034393-28|CAI79175.1|  333|Caenorhabditis elegans Hypothetical...    27   8.0  
AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchang...    27   8.0  

>Z70212-6|CAA94166.1|  336|Caenorhabditis elegans Hypothetical
           protein R04D3.8 protein.
          Length = 336

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 248 RIMSYTWVEV*KKTLDLLTFYWGILFKISLNFKNMMLRWRPKNQLTSFLTYLIY 409
           RI+S   +    +   L     GI   ++L FK M LRW   + +T  LT+L +
Sbjct: 84  RILSTLTMYTCHQIFQLTILLSGISLIVTLYFKLMTLRWTKVSSITMILTFLAF 137


>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 266 MYNSLFWYKTFFYSHHFMYYIYKVVIVNHLYVL 168
           +Y+   + K+  Y  H +Y IY + I+N LY++
Sbjct: 46  IYHIYTYTKSPIYHIHHIYQIYHIHIINTLYII 78


>Z99710-12|CAI79158.1|  333|Caenorhabditis elegans Hypothetical
           protein Y18D10A.22 protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 183 VYNYYFVNVIHKMVRVKKSLVPE**VIHGLRFKK--KHWIY 299
           V  + F N++HK+++   S VP+    H  RFK+   +WI+
Sbjct: 59  VMTWKFCNLVHKLLQEGHSTVPQETYRHLNRFKQLAHYWIH 99


>AL034393-28|CAI79175.1|  333|Caenorhabditis elegans Hypothetical
           protein Y18D10A.22 protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 183 VYNYYFVNVIHKMVRVKKSLVPE**VIHGLRFKK--KHWIY 299
           V  + F N++HK+++   S VP+    H  RFK+   +WI+
Sbjct: 59  VMTWKFCNLVHKLLQEGHSTVPQETYRHLNRFKQLAHYWIH 99


>AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchangers
           protein 9 protein.
          Length = 651

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -1

Query: 293 PMFFFKPQPMYNSLFWYKTFFYSHHFMYYIYKVVIVNHLYVLQLITNLEFD 141
           P+FFFK     N + W K  F  H F        I   L+ +Q+IT   FD
Sbjct: 411 PVFFFKLTVPSNEMSWCKPLFILHCF------ASIQFALFSIQIITLKPFD 455


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,182,919
Number of Sequences: 27780
Number of extensions: 261585
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)