Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6402
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    29   0.52 
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   4.8  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.8  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   6.4  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   8.5  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 516 PQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVF 418
           P + RLQ +R  G+   PNG P Y  ++K +VF
Sbjct: 556 PNSSRLQKLRAPGLC--PNGSPNYRNRYKLIVF 586


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 173 WRHNSKEYPCNRPRVLGYLGSTFRAMSSFGVIWKAKPSWRPKCWESS 313
           W+  +++   NR R  G     F A   F  +  +K  W+PK W+SS
Sbjct: 39  WKQEARDER-NRKRFHGAFTGGFSA-GYFNTVG-SKEGWQPKSWKSS 82


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 165 GVLLRSERANLCLYRVELNQVQFTPFGDS 79
           G+L++ ER NL  YRV L   QF P  DS
Sbjct: 688 GILIKPERYNLFKYRVYL--PQFLPPTDS 714


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 234 RHFERCPVSESFGRQSQ 284
           ++FE CPVS++ GR S+
Sbjct: 353 QNFEWCPVSDALGRDSK 369


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 311 STERSGTSRLDKGFCFIKHKSGLAWSTAPISGPGLPNTSFF 433
           ST     +  + GF    +  GL   ++P+S    PN SFF
Sbjct: 324 STSYHANTASEDGFSSSYNSQGLFGISSPLSSGVTPNQSFF 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,260
Number of Sequences: 5004
Number of extensions: 72337
Number of successful extensions: 247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)