Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6402
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450... 36 0.019
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 30 1.6
01_07_0107 - 41118897-41120036 29 3.8
03_06_0689 + 35564143-35564643,35565994-35566452,35566553-35567176 28 5.0
06_03_1242 - 28618752-28618980,28619457-28619797 28 6.6
04_04_0773 - 27974909-27977191 28 6.6
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 28 6.6
02_05_0053 - 25442186-25443189,25444359-25444914 28 6.6
02_03_0188 + 16173801-16173910,16174045-16174402 28 6.6
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 28 6.6
10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359 27 8.7
07_03_0845 - 21979581-21981281 27 8.7
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896... 27 8.7
07_01_0158 + 1111819-1111972,1113311-1114869 27 8.7
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 27 8.7
>05_01_0521 +
4500268-4500283,4500364-4500680,4500999-4501094,
4501219-4501296,4501333-4501557,4502842-4502910,
4502946-4503200
Length = 351
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/96 (26%), Positives = 45/96 (46%)
Frame = +1
Query: 151 AKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRY 330
AK+D G S+ + I + D + V++R ++KLA+ +LG ++ +
Sbjct: 86 AKEDALCTKNMVPGESVYGEKRISVQNED-GTKVEYRVWNPFRSKLAAAVLGGVDNI--W 142
Query: 331 FTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPF 438
PG R+L V + S + +P+Y +LPF
Sbjct: 143 IAPGTRVLYLGGASGTTVSHVSDIVGPSPRYAILPF 178
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -2
Query: 535 RGNRSPSADPEAPNDP*EWDYRQSERPSSVWSQMEEAGIWEPRPRDGSSTPRE 377
RG++SPS PE P D R SE S+V + E+ + P S P E
Sbjct: 312 RGDKSPSIKPEGAKQP---DQRSSEAASTV-TPFEQLALPAPASSSSSKPPVE 360
>01_07_0107 - 41118897-41120036
Length = 379
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = -1
Query: 254 WTSLEMSTPSIPILSDGC-----RDTPWNCGAMTKG 162
W++ + ++P SD C +D PWNC + T G
Sbjct: 19 WSTCLAAHSTVPCRSDVCAAAAVQDNPWNCSSSTDG 54
>03_06_0689 + 35564143-35564643,35565994-35566452,35566553-35567176
Length = 527
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 527 PKSLRRPRGSKRSVRMGLSTIRTALLCMESNGRSWYLGAPAQRWEQ 390
P +L PR + R VR+G + M + +W +G A RWE+
Sbjct: 392 PATLLMPRETMRDVRIGGYEVAARTRVMVN---AWAIGRDAARWEE 434
>06_03_1242 - 28618752-28618980,28619457-28619797
Length = 189
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Frame = -3
Query: 516 PQTQRLQTIRENGIIDNPNGPPL-------YGVKWKKLVFGSPGPEM 397
P R+ R N I+ P PPL YG W F +PGP +
Sbjct: 105 PSGPRINNSRTNIYINPPVAPPLVGGYGYGYGYGWSPFSFFAPGPSV 151
>04_04_0773 - 27974909-27977191
Length = 760
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -3
Query: 522 VPPQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVFGSPGPEMGAVL 385
VP QT LQT + PP G +W G G G ++
Sbjct: 97 VPDQTHTLQTTHTPQFLGLSAPPPPQGKRWSSSSHGGSGAGAGVIV 142
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 249 CPVSESFGRQSQVGVQNAGSPQQSEAVLHAWTKAFAL*STSPASRGVLL 395
C E+ +Q + A PQQ++ V T A A + SPA RG +
Sbjct: 94 CAEGEAAAQQPTLAPPPAQQPQQNQGVGFGGTGAGAATTVSPAPRGTTM 142
>02_05_0053 - 25442186-25443189,25444359-25444914
Length = 519
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 503 GSKRSVRMGLSTIRTALLCMESNGRSWYLGAPAQRWEQYSTRGRTCA 363
G + +GL L + + SW G PA +QYS RG+ A
Sbjct: 351 GEITELAVGLEATGRPFLWVLKDDPSWRAGLPAGYTDQYSGRGKIVA 397
>02_03_0188 + 16173801-16173910,16174045-16174402
Length = 155
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 171 HGATIPRSIPATVREYWDT-WGRHFERCPVSESFGRQSQVGVQNAGSPQQSE 323
HG + R PA R++W W RH E PV+ Q G GS Q+S+
Sbjct: 58 HGWRLRR--PARHRQWWRRGWLRHEEAWPVAAVVVPQECRGAIGKGSDQRSD 107
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +2
Query: 287 WRPKCWESSTERSGTSRLDKGFCFIKHKSGLAWSTAPISGPGLPNTSFFHLTPYRGGP 460
WRP+ SS+ + KG +H S P+S P P + +PY+ P
Sbjct: 34 WRPRSSPSSSLLRNKGKGKKGSSNRQHGSNRPSPKPPLSPPPSPGNGKGYQSPYQPSP 91
>10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359
Length = 514
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = +1
Query: 370 VRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILTDRLEPLGLRRDFGSLCILDR 549
+RPR S W+G + RRA ++ + + +LE G GS ILD
Sbjct: 302 LRPRTRRQSSRWSGGGGATV----GRLRRATQLRELMVRLKKLEIGGKAAPAGS--ILDV 355
Query: 550 MFHGGVL 570
FHGGVL
Sbjct: 356 AFHGGVL 362
>07_03_0845 - 21979581-21981281
Length = 566
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 191 EYPCNRPRVLGYLGSTFRAMSSFG-VIW 271
E+ + R++ LGSTF A+ +FG +IW
Sbjct: 443 EHKTHHMRLIAVLGSTFVALCAFGAIIW 470
>07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,
8963991-8964128,8964206-8964355,8964436-8964683,
8964825-8964953,8965735-8965960,8966909-8966975,
8967488-8967551,8968902-8969000,8969074-8969157,
8969240-8969321,8969412-8969460,8969664-8969769,
8970650-8970734,8970814-8970917,8970994-8971109,
8971187-8971373,8972005-8972113,8972633-8972761,
8973365-8973449,8973812-8973947,8974078-8974230,
8974488-8974634,8974801-8974941,8975580-8975903
Length = 1400
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 13 LSRSAVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKD 162
L R A ++ R L++ + SL S+W + L+ +PI +V F KKD
Sbjct: 1220 LRRCANRQVRKTLLA-ILRSLSLRSDWRVIVLLHSHPILVKVYLFNKKKD 1268
>07_01_0158 + 1111819-1111972,1113311-1114869
Length = 570
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +1
Query: 184 FQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRL 351
F G+ LQ SES I+G I F H E + K L +L + P RL
Sbjct: 275 FLGMILQISESTNIVGTIIKCLQLFAPHFESVTETVRKELTLLPTQDFSWIPHSRL 330
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +1
Query: 25 AVQERRSKLVSEVEN--SLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVS 198
A+QE K V++V + + ++S +GEL L+ P++ V A T + F+G+
Sbjct: 539 AIQEEDGKEVTKVLHRYTADKLSSFGELALMYNKPLQASVRAVTTGTLWALKREDFRGIL 598
Query: 199 LQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGV 309
+ +I L + S ++ R + ++LA ++ V
Sbjct: 599 MSEFSNIPSLKLLRSVELFTRLTMLQLSQLADSLVEV 635
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,476,855
Number of Sequences: 37544
Number of extensions: 516770
Number of successful extensions: 1700
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1699
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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