Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6402
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 45 4e-05
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 38 0.007
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 35 0.039
U41012-7|AAM75375.1| 639|Caenorhabditis elegans Hypothetical pr... 32 0.36
U41012-6|AAM75376.1| 642|Caenorhabditis elegans Hypothetical pr... 32 0.36
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 31 0.48
Z74030-16|CAI79165.1| 481|Caenorhabditis elegans Hypothetical p... 30 1.1
AC024835-3|AAK68538.2| 405|Caenorhabditis elegans Hypothetical ... 29 1.9
AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction ... 29 2.5
AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin prote... 29 2.5
AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin prote... 29 2.5
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical pr... 28 4.4
U28993-3|AAT81196.1| 635|Caenorhabditis elegans Hypothetical pr... 28 4.4
U28993-2|AAK31497.1| 720|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z73105-3|CAA97441.2| 205|Caenorhabditis elegans Hypothetical pr... 28 5.9
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 45.2 bits (102), Expect = 4e-05
Identities = 29/116 (25%), Positives = 53/116 (45%)
Frame = +1
Query: 61 VENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDI 240
++NS+ + W +LN + P K+ + A + + GV + PS ++ LG+
Sbjct: 926 IQNSIDIIVSWSKLNELPLAPTKSALLALGTRNKN--QSYSVDGVPITPSSTVRDLGLIT 983
Query: 241 SSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWA 408
++F H+ + LA + +A +P LYK V P + YCS ++A
Sbjct: 984 DCKLKFEHHIVKVSCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVYA 1039
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 37.5 bits (83), Expect = 0.007
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 2/139 (1%)
Frame = +1
Query: 55 SEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGV 234
+ ++++L V +W + + + N KT ++ F G ++ LG
Sbjct: 125 NNLQSALDAVVDWTKGSKLTLNQSKTVHVTVGKRRIDFKY--HLDGYPIERKAITRDLGF 182
Query: 235 DISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRL--LLYKAQVRPRVEYCSHLWA 408
IS + F H LA L N +Y T ++L LLYK +RPR+EY + + +
Sbjct: 183 LISEKLDFSDHWRKCINLAKFQLA--NMFNKYSTSNKKLMILLYKTFIRPRLEYGTVVSS 240
Query: 409 GAPKYQLLPFDSIQRRAVR 465
K +S+Q R
Sbjct: 241 PTKKSDEKTIESVQNAFTR 259
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 35.1 bits (77), Expect = 0.039
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 226 LGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRL--LLYKAQVRPRVEYCSH 399
LG IS + F H + LA L N +Y T ++L LLYK +RPR+EY +
Sbjct: 150 LGFLISEKLDFSEHWKKSINLAKFQLA--NIFNQYSTSNKKLMILLYKTFIRPRLEYGTV 207
Query: 400 LWAGAPKYQLLPFDSIQRRAVR 465
+ + K +S+Q R
Sbjct: 208 VSSPTKKSDEKAIESVQNAFTR 229
>U41012-7|AAM75375.1| 639|Caenorhabditis elegans Hypothetical
protein C06A6.2a protein.
Length = 639
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 555 EHTVQNTEGTEVPPQTQRLQTIRENGI--IDNPNGPPLYGVK 436
+H T + P ++ Q + +N I +DN NGPPL VK
Sbjct: 397 DHAASTTSVLQAPNYSELKQMLEKNNILKVDNENGPPLKRVK 438
>U41012-6|AAM75376.1| 642|Caenorhabditis elegans Hypothetical
protein C06A6.2b protein.
Length = 642
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 555 EHTVQNTEGTEVPPQTQRLQTIRENGI--IDNPNGPPLYGVK 436
+H T + P ++ Q + +N I +DN NGPPL VK
Sbjct: 397 DHAASTTSVLQAPNYSELKQMLEKNNILKVDNENGPPLKRVK 438
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 31.5 bits (68), Expect = 0.48
Identities = 22/92 (23%), Positives = 41/92 (44%)
Frame = +1
Query: 154 KKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYF 333
KK+P + + + + PS LG+ S + F+ H++ LA L ++ +
Sbjct: 175 KKNPKTVY-KINNLPISPSNIARDLGILTDSKLTFKPHIKKIVSLALLRCKQLLKSFKSL 233
Query: 334 TPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQL 429
P L+K + P +EY S +++ P L
Sbjct: 234 CPEFYCNLFKTYILPLIEYGSAVYSPKPSSSL 265
>Z74030-16|CAI79165.1| 481|Caenorhabditis elegans Hypothetical
protein D1054.9e protein.
Length = 481
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = -3
Query: 591 SSRTTPSEHSPMEHTVQNTEGTEVPPQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVFGS 412
S+ TT +E S T T TE P T + + G +P P G KWK L F
Sbjct: 273 STTTTTAEPSTTATTTTTTT-TEEPTTTTKGSEEQLGGKGPSPLRPITVGHKWKPLRFKK 331
Query: 411 PGP 403
P P
Sbjct: 332 PEP 334
>AC024835-3|AAK68538.2| 405|Caenorhabditis elegans Hypothetical
protein Y57E12B.4 protein.
Length = 405
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 3/27 (11%)
Frame = -3
Query: 597 LVSSRT-TPSEHSPMEH--TVQNTEGT 526
+V ++T TP+EH P EH T++NTE T
Sbjct: 238 VVENKTLTPTEHKPTEHSTTIENTEPT 264
>AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction
innexin protein.
Length = 362
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +2
Query: 251 SSFGVIWKAKPSWRPKCWESSTERSGTSRLDKGFCFIKHKSGLAWSTAPISGPGLPNTSF 430
S+F ++ K +CW + G + +C I++ + + + + GP +
Sbjct: 36 SAFFIMAKQYVGQSIQCWAPKQFKGGWEEYAESYCLIENTYYVHMNNSNLPGPAIRENK- 94
Query: 431 FHLTPYRGGP---FGLSIIPF-SRIVWS 502
L Y+ P FGL+++ + R++W+
Sbjct: 95 -ELKYYQWVPFILFGLAVVIYIPRVIWN 121
>AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin protein
17, isoform b protein.
Length = 266
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +2
Query: 251 SSFGVIWKAKPSWRPKCWESSTERSGTSRLDKGFCFIKHKSGLAWSTAPISGPGLPNTSF 430
S+F ++ K +CW + G + +C I++ + + + + GP +
Sbjct: 36 SAFFIMAKQYVGQSIQCWAPKQFKGGWEEYAESYCLIENTYYVHMNNSNLPGPAIRENK- 94
Query: 431 FHLTPYRGGP---FGLSIIPF-SRIVWS 502
L Y+ P FGL+++ + R++W+
Sbjct: 95 -ELKYYQWVPFILFGLAVVIYIPRVIWN 121
>AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin protein
17, isoform a protein.
Length = 362
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +2
Query: 251 SSFGVIWKAKPSWRPKCWESSTERSGTSRLDKGFCFIKHKSGLAWSTAPISGPGLPNTSF 430
S+F ++ K +CW + G + +C I++ + + + + GP +
Sbjct: 36 SAFFIMAKQYVGQSIQCWAPKQFKGGWEEYAESYCLIENTYYVHMNNSNLPGPAIRENK- 94
Query: 431 FHLTPYRGGP---FGLSIIPF-SRIVWS 502
L Y+ P FGL+++ + R++W+
Sbjct: 95 -ELKYYQWVPFILFGLAVVIYIPRVIWN 121
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 243 RNVDPKYPNTLGRLQGYSLELWRHDKG 163
R V +YP+++GR++ Y ELW +D G
Sbjct: 23 REVYERYPDSVGRVKRY--ELWSNDDG 47
>Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical
protein K09A11.5 protein.
Length = 650
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 544 PKYRGNRSPSADPEAPNDP*EWDYRQSE 461
PK RG S S+ +D EWDY++ +
Sbjct: 24 PKMRGECSSSSQDHESDDDAEWDYKEQK 51
>U28993-3|AAT81196.1| 635|Caenorhabditis elegans Hypothetical
protein F22D3.2b protein.
Length = 635
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -3
Query: 594 VSSRTTPSEHSPMEHTVQNTEGTEVPPQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVFG 415
+S TTP + P + GT +PP + LQ E+G + P + + ++ + F
Sbjct: 160 LSRSTTPRKIHPYVIHEEPLHGTRIPPSSTVLQEPIEDGAFEQPLVLKISEIYFENIDFR 219
Query: 414 SPGPEMGAVLHARPD--LCF 361
+ G V+ D CF
Sbjct: 220 AAEEADGYVIFGDTDNGFCF 239
>U28993-2|AAK31497.1| 720|Caenorhabditis elegans Hypothetical
protein F22D3.2a protein.
Length = 720
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -3
Query: 594 VSSRTTPSEHSPMEHTVQNTEGTEVPPQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVFG 415
+S TTP + P + GT +PP + LQ E+G + P + + ++ + F
Sbjct: 160 LSRSTTPRKIHPYVIHEEPLHGTRIPPSSTVLQEPIEDGAFEQPLVLKISEIYFENIDFR 219
Query: 414 SPGPEMGAVLHARPD--LCF 361
+ G V+ D CF
Sbjct: 220 AAEEADGYVIFGDTDNGFCF 239
>Z73105-3|CAA97441.2| 205|Caenorhabditis elegans Hypothetical
protein R13.2 protein.
Length = 205
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +3
Query: 138 LRVHCEEGPLCHGATIPRSIPATVREYWDTWGRHFERCPVSESFGRQSQVGVQNAGSPQQ 317
L VHC + C + I S P T++ ++ W E ES S V +GS
Sbjct: 2 LDVHCCDHEQCGSSVIDLSTPHTLQRDFNNWLNGIEVPNSYESQQSDSSSSVDESGSKTS 61
Query: 318 S 320
S
Sbjct: 62 S 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,672,163
Number of Sequences: 27780
Number of extensions: 411837
Number of successful extensions: 1292
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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