Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6401
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   3.8  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    26   6.7  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   6.7  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   8.9  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -2

Query: 289 ILWFYSIFINGVTLCVTAWCYVLFIYLT 206
           + W +S+ +  + +  TAW  + F ++T
Sbjct: 179 LFWMFSLLVGSLVVYFTAWRQITFTWIT 206


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 200 IALSSSTKGNPTVSTKLRHQFH 135
           I L S TKG+  V+   +H+FH
Sbjct: 323 ICLESFTKGDKVVALPCKHEFH 344


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 367 NSDGHVIDINHAKPLVCQ-HPQMFG 438
           N DGH+ ++  A P+V    PQ+FG
Sbjct: 301 NPDGHISELRAALPVVLMIPPQLFG 325


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -2

Query: 460 SRKINLNGQTFAGVDKLKALRDLCRLRGHQNYWLCDNNVTGLSGPIV 320
           + ++ L  Q+F   D+++ +  +  +  H N +L D+N+T +S   V
Sbjct: 610 TEELTLQKQSFIERDRMQMISQMRNM--HDNKYLVDDNLTFISSQFV 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,439
Number of Sequences: 5004
Number of extensions: 66021
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)