Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6401
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767...    31   1.00 

>11_02_0042 -
           7672565-7672729,7672902-7672977,7673409-7674132,
           7674684-7674708,7675041-7675486,7676643-7676862,
           7677609-7678459,7678697-7679555
          Length = 1121

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
 Frame = -3

Query: 237 HGVTSCSFTLQIYRAFKFNE--GKSYCFNQTETSI-------PYFPHVPSGYGMSSPPRC 85
           H V+      Q YR   FNE  G+S+       +I        Y  H P G G +S  R 
Sbjct: 329 HAVSDQRSLSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARI 388

Query: 84  FPSAMTCPSLKE--ACG 40
           F +A++C ++ E   CG
Sbjct: 389 FSAALSCVAIGENKPCG 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,541,653
Number of Sequences: 37544
Number of extensions: 394397
Number of successful extensions: 843
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)