Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6401
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61954-9|AAK29808.1|  286|Caenorhabditis elegans Fatty acid elon...    30   2.1  
U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine rece...    28   6.3  
Z99710-7|CAJ58493.1|  645|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z99710-2|CAE54894.1|  562|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z99710-1|CAB16867.1|  674|Caenorhabditis elegans Hypothetical pr...    28   8.3  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    28   8.3  

>U61954-9|AAK29808.1|  286|Caenorhabditis elegans Fatty acid
           elongation protein 5 protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 393 KSRKAFSLSTPANVW 437
           K RKAF LSTP N+W
Sbjct: 57  KDRKAFDLSTPLNIW 71


>U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 10 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = -2

Query: 322 VSSSTLVHSRSILWFYSIFINGVTLCVTAWCYVLFIYLTNLSRFQVQRREILLFQPN*DI 143
           +   T +  R I +FY IF++ ++  V A  Y++F  L +    +++ ++  +      +
Sbjct: 42  IKKITRIRHRMIFFFYRIFVD-ISYGVLACAYMIFCILYSYFTEELREKQGFIVYLGFPL 100

Query: 142 NSIFSPRTI 116
            S+ + RTI
Sbjct: 101 QSVAAIRTI 109


>Z99710-7|CAJ58493.1|  645|Caenorhabditis elegans Hypothetical
           protein F08A8.1c protein.
          Length = 645

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 409 KALRDLCRLRGHQNYWLCDNNVTGLSGPIVSSSTLVHSRSILWFY--SIFINGVTLCVTA 236
           +AL DL  L  H NY L D     L    +SS+ L + R  L+FY   I  N V+L + +
Sbjct: 532 EALSDLLHL--HVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSL-LDS 588

Query: 235 W 233
           W
Sbjct: 589 W 589


>Z99710-2|CAE54894.1|  562|Caenorhabditis elegans Hypothetical
           protein F08A8.1b protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 409 KALRDLCRLRGHQNYWLCDNNVTGLSGPIVSSSTLVHSRSILWFY--SIFINGVTLCVTA 236
           +AL DL  L  H NY L D     L    +SS+ L + R  L+FY   I  N V+L + +
Sbjct: 449 EALSDLLHL--HVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSL-LDS 505

Query: 235 W 233
           W
Sbjct: 506 W 506


>Z99710-1|CAB16867.1|  674|Caenorhabditis elegans Hypothetical
           protein F08A8.1a protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 409 KALRDLCRLRGHQNYWLCDNNVTGLSGPIVSSSTLVHSRSILWFY--SIFINGVTLCVTA 236
           +AL DL  L  H NY L D     L    +SS+ L + R  L+FY   I  N V+L + +
Sbjct: 561 EALSDLLHL--HVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSL-LDS 617

Query: 235 W 233
           W
Sbjct: 618 W 618


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 171  SYCFNQTETSIPYFPHVPSGYGMSSPPRCF 82
            S  F     +IP   H+PSGY +SS  R F
Sbjct: 2673 SVIFATRNYNIPNLFHLPSGYSLSSDQRTF 2702


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,093,414
Number of Sequences: 27780
Number of extensions: 357607
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)