Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6400
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.42 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 163 IWCFYLNIICF-NVNGLCEISVDRFC 237
           +W  +  + C  ++  LC ISVDRFC
Sbjct: 116 LWVSFDVLSCTASILNLCMISVDRFC 141


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 329 GYYINTIIIPKHDHAVRAV 385
           G  +   + PKHDH  R +
Sbjct: 532 GAVVRVFLGPKHDHQGRPI 550


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 11   RRHVRSVSSFLISE*NNQTDECTCSFSRL 97
            R H ++ SSF  S+ +N+  E  C   +L
Sbjct: 1865 RNHDQNNSSFNDSKESNEISEAECDRDQL 1893


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,079
Number of Sequences: 438
Number of extensions: 2554
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)