Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6399
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.077
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    29   0.41 
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   5.0  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   6.7  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.7  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    24   8.8  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    24   8.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.077
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -2

Query: 334  HRHLQRKCDISSKASSIVTTAAP---PFKPKPITASRQK*AGWW 212
            HRHL R    +SK  SIV+T  P    F  KP+     +   WW
Sbjct: 1335 HRHLSRSSSRASKKPSIVSTTGPFNESFSAKPVEPCASE--KWW 1376


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 24  GDAPVFESQTGTNFSNEICTQQMFTIDFHGEGITLCNKKTNPQNYN 161
           G   +FES TGT  S  +    +  +D HG  +   N+K+N    N
Sbjct: 37  GKIGIFESPTGTGKSLSLICASLTWLDEHGGVLLEDNEKSNDNKSN 82


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 67  LMKYVLNKCSRLTSTVKE*HCVIKKQTRKIIICVIPGGRT 186
           +MK + + C+R  S V       K   +K+++C+I  GRT
Sbjct: 211 VMKNISHLCTRKNSQVWG-----KDAWKKVVVCIISDGRT 245


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 63  NWYPSGIRTPVHRLN 19
           ++YPSGI TPV  +N
Sbjct: 409 DFYPSGINTPVSGIN 423


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = -3

Query: 258 NRNPLLLHGRNRQGGGTYPCGLTTGPTTRNYANYNFAGLFFYYTMLFLHRGSQ 100
           N   ++LHG N Q      CGL    T+ N   +  A   F   M F   G Q
Sbjct: 106 NGELIVLHGINHQAAMLTACGLFM-VTSSNTNKWKIAFASFLLGMFFTQFGFQ 157


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 270 PHPSNRNPLLLHGRNRQGGGTYPCGLTTGPTTRNYANY 157
           PHP N   +LL G N Q   + P         +N  +Y
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSPLNPYIRTIIKNRRDY 134


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 234 GRNRQGGGTYPCGLTTGPTTRNYANYN 154
           G ++ G G+ P    T P +RN++NY+
Sbjct: 28  GPSQSGTGSIPYS-PTSPLSRNFSNYS 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,758
Number of Sequences: 5004
Number of extensions: 36616
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)