Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6399
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0019 - 9688395-9688867,9688905-9689070                           31   0.54 
03_01_0424 - 3253179-3253367,3253480-3253556,3253654-3253739,325...    28   2.9  
06_03_0311 + 19466258-19466303,19466496-19467087,19468059-194685...    27   6.6  
11_03_0027 + 9078792-9079613                                           27   8.7  
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281...    27   8.7  

>10_06_0019 - 9688395-9688867,9688905-9689070
          Length = 212

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 202 VRTYNRSYHQELRKL*FCGFVFLLHNVIPSPWKS 101
           VR+Y  S+H    K  +C F F+ H+V+ S W S
Sbjct: 107 VRSYATSFHGT-GKAEYCCFTFIRHDVLASQWSS 139


>03_01_0424 -
           3253179-3253367,3253480-3253556,3253654-3253739,
           3253844-3254321,3254393-3254519,3254624-3254740,
           3254853-3254966,3256650-3256715,3257738-3258117,
           3258217-3258496
          Length = 637

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 267 HPSNRNPLLLHGRNRQGGGTYPCGLTTGPTTRNYANYN 154
           H      ++  G     G    C LTTGP +R+  NYN
Sbjct: 335 HIDGNKEMIAFGTMNIVGSLTSCYLTTGPFSRSAVNYN 372


>06_03_0311 +
           19466258-19466303,19466496-19467087,19468059-19468524,
           19470028-19470081,19470112-19470226,19470499-19470605
          Length = 459

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -3

Query: 273 LPHPSNRNPLLLHGRNRQGGGTYPCGLTTGPTTRNYANYNFAGLFFYYTMLFL 115
           L  P  R  +   G  +Q        L   P T+  A  NFAGL F  ++  L
Sbjct: 334 LYQPDGRTMVYNVGLMQQSTSAASLSLAASPATKTDAKKNFAGLCFLSSLAIL 386


>11_03_0027 + 9078792-9079613
          Length = 273

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -2

Query: 304 SSKASSIVTTAAPP---FKPKPITASRQK*AGWWYLPVRTYNRSYHQ 173
           SS +SS+ TTA+ P     P P+TAS         L  +   R Y Q
Sbjct: 52  SSSSSSVTTTASTPNSPVTPAPVTASSPPPPSLELLGAQLAERDYRQ 98


>10_01_0266 +
           2816391-2818898,2818934-2819162,2819369-2819444,
           2819776-2819830,2822042-2822110,2823077-2823321,
           2824029-2824065
          Length = 1072

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 352 RAHSGAHRH--LQRKCDISSKASSIVTTAAPPFKP 254
           RAH  +HRH  L     +SS A+S  T++   + P
Sbjct: 9   RAHRSSHRHFLLSSSFHLSSAATSTTTSSTSSYDP 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,993
Number of Sequences: 37544
Number of extensions: 265738
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)