Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6397
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.5  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    26   5.5  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   5.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   9.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +3

Query: 66  TENTPKSVTAAES*EENSRTSTHVTRFGQWTTWLTRKASIRY*ATCLQSTRLTLNP*PWL 245
           + +TP + T   +      TST VT     TT  T   S+ Y +T + ST LT       
Sbjct: 417 SSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTN---C 473

Query: 246 KTGTS-SYTPRLLKSTP 293
            T TS  YT   + STP
Sbjct: 474 TTSTSIPYTSTPVTSTP 490



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +3

Query: 60  TLTENTPKSVTAAES*EENSRTSTHVTRFGQWTTWLTRKASIRY*ATCLQSTRLT 224
           T   +TP + T   +      TST VT     TT  T   SI Y +T + ST LT
Sbjct: 438 TPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLT 492


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 191  LSDVPPEHP--ADSESVALAKDRHFQLYSKIAEEHAQHPHP 307
            L  +  EH   AD ES+ +A+D +  +   +AEE+ +   P
Sbjct: 2561 LQQLSAEHNRHADLESMVMARDDYINVQQPLAEENQEEGSP 2601


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 213 TRLTLNP*PWLKTGTSSYTPRLLKSTPNIHILMKPAFLVNQPPSPKP 353
           T   LNP P     T+   P +   +P+I +  +PA  V  PP  +P
Sbjct: 547 TSQQLNPAP-----TAMPHPNITSPSPSISVTQRPAVNVGPPPYVRP 588


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 260 QLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSEL 373
           +L+ + A   A+HP  Y+T V   SA  AE+T  H  L
Sbjct: 176 RLFIQSAHNIAKHPSLYDTEVRNPSA--AESTNSHVSL 211


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 553 FRNLNNYDTNPS 588
           FRN  NYD NPS
Sbjct: 605 FRNYENYDANPS 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,449
Number of Sequences: 5004
Number of extensions: 41173
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)