Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6397
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 33 0.20
10_03_0036 - 7286425-7286463,7286686-7286974,7287306-7288192,728... 28 5.7
03_03_0256 + 15898702-15900420 28 5.7
12_02_1001 - 25162761-25162977,25163060-25163230,25163309-251638... 28 7.6
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 28 7.6
10_05_0056 + 8635567-8635782,8636275-8637006,8637088-8637531,863... 28 7.6
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 7.6
07_03_0113 - 13557496-13557960 28 7.6
06_03_0554 - 22057957-22058014,22058093-22058426,22058446-220589... 28 7.6
04_04_0903 - 29269794-29270141,29270227-29270751 28 7.6
03_05_0565 + 25667391-25667696 28 7.6
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 28 7.6
>07_01_0373 + 2783596-2784933
Length = 445
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 203 PPEHPADSESVALAKDRHFQLYSKIAEEHAQHPH-PYETSVPRQSAAVAEA 352
P H A+ +A+A +HF L AE HA+ H ++ +P +AA A A
Sbjct: 291 PAPHLANITPIAMAPAQHFTLTPAAAEHHAEMTHYSFDHFMPVHAAAAAAA 341
>10_03_0036 -
7286425-7286463,7286686-7286974,7287306-7288192,
7288280-7288726,7288805-7288830,7288984-7289512
Length = 738
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 203 PPEHPADSESVALAKDRHFQLY 268
PP+ PA + S A+DRH Q Y
Sbjct: 435 PPKRPASAPSAPPAQDRHAQFY 456
>03_03_0256 + 15898702-15900420
Length = 572
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 158 YVADKEGFHPILSDVPPEHPADSESVALAKDRHFQLYSKIAEEHAQHPHPYETSVP 325
Y AD G H + P P ++A ++ + +L SK E Q P P E P
Sbjct: 124 YAADPSGLHIVGDAQPSAEPDTVYNLAPSEHKRRRLQSKDEEGANQEPLPPEAKNP 179
>12_02_1001 -
25162761-25162977,25163060-25163230,25163309-25163814,
25163827-25164195,25164283-25164729,25164808-25164833,
25164987-25165515
Length = 754
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 203 PPEHPADSESVALAKDRHFQLY 268
PP+ PA + S A+DRH Q Y
Sbjct: 435 PPKRPASAPSAPSAQDRHAQSY 456
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 95 SGVVRGKFAYVDPRH-KVRTVDYVADKEGFHPILSDVPPEHPADSESV 235
S V+G F Y+DP + K R + +D F +L +V PA +S+
Sbjct: 656 STAVKGSFGYLDPEYFKTRQLTDRSDVYSFGVVLFEVLCARPAIDQSL 703
>10_05_0056 +
8635567-8635782,8636275-8637006,8637088-8637531,
8637618-8637665,8637706-8638505,8638584-8638754,
8638837-8639125,8639211-8639249,8639355-8639393
Length = 925
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 203 PPEHPADSESVALAKDRHFQLY 268
PP+ PA + LA+DRH Q Y
Sbjct: 552 PPKRPASAPLAPLAQDRHAQSY 573
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 203 PPEHPADSESVALAKDRHFQLY 268
PP+ PA S S A+DRH Q Y
Sbjct: 588 PPKRPASSLSAPPAQDRHAQSY 609
>07_03_0113 - 13557496-13557960
Length = 154
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 203 PPEHPADSESVALAKDRHFQLY 268
PP+ PA + S A+DRH Q Y
Sbjct: 90 PPKRPASAPSAPPAQDRHAQYY 111
>06_03_0554 -
22057957-22058014,22058093-22058426,22058446-22058977,
22059211-22059459,22059551-22059563,22059608-22059942
Length = 506
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 191 LSDVPPEHPADSESVALAKDRHFQLY 268
L PP+ PA + S A+DRH Q Y
Sbjct: 296 LGGSPPKRPASAPSAPPAQDRHAQSY 321
>04_04_0903 - 29269794-29270141,29270227-29270751
Length = 290
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 355 GGFGDGG*LTRNAGFIRMWMLGVLFSNLG 269
GG GDGG + AG + W L + + LG
Sbjct: 194 GGAGDGGGVVAEAGEVSKWKLALFGAALG 222
>03_05_0565 + 25667391-25667696
Length = 101
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 212 ALEARRSVSDGSLPCQPRSPLSEPCDVGRR 123
A RRS S GS +P++P+ EP GRR
Sbjct: 63 AASPRRSCS-GSASAEPQAPVEEPHGTGRR 91
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 264 SWKCLSLAKATDSESAGCSGGTSLSIGWKPSLSAT*STVRTL*RGSTYAN 115
+W+C ++A + E G WKP + S RT R YAN
Sbjct: 115 NWQCYNIAPVAEKEKIFVDFGCLYVCHWKPLIWKFSSGKRTCARPMLYAN 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511,119
Number of Sequences: 37544
Number of extensions: 316363
Number of successful extensions: 1269
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -