Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6397
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical ...    32   0.31 
AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical...    31   0.72 
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    29   3.9  
U23511-10|AAC46789.3|  260|Caenorhabditis elegans Hypothetical p...    28   6.8  
AF016430-10|AAB65374.1|  467|Caenorhabditis elegans Hypothetical...    28   6.8  
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical
           protein F13A2.3 protein.
          Length = 336

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 12  HRSPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTSTHVTR 143
           H +  C PI  D++P T   NTP + T  E+ E+     ++ TR
Sbjct: 98  HINIKCEPISDDENPTTANSNTPTTPTTPENTEDPFEGPSYATR 141


>AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical
           protein Y46G5A.10 protein.
          Length = 732

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +3

Query: 15  RSPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTSTHVT---RFGQWTTWLTRKASI 185
           RS T     +  SP ++T+N PK+ T+     EN +T  H T   RF   T+ L ++  I
Sbjct: 306 RSDTILSRSVSTSPSSVTDNIPKTSTSRIPSSENPKTMEHTTTSRRFPTQTSILRKEHEI 365


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 297 CWACSSAILEYSWKCLSLAKATDSESAGCSGG 202
           C A S+A    +WK +  ++A +SE  GC  G
Sbjct: 12  CLALSAADCPAAWKAILNSQAEESEDNGCEAG 43


>U23511-10|AAC46789.3|  260|Caenorhabditis elegans Hypothetical
           protein C32D5.1 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 3   LTLHRSPTCSPILLDDS-PDTLTENTPKSVTAAES*EENSRTSTHVTRF 146
           +T  +S +C+ I L+ S P T +  TP S     + E+++    +VT F
Sbjct: 180 VTCQQSTSCTSIQLNSSAPSTCSAKTPNSTANLPTSEKHADIIAYVTNF 228


>AF016430-10|AAB65374.1|  467|Caenorhabditis elegans Hypothetical
           protein C05C8.7 protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 101 VVRGKFAYVDPRHKVRTVDYVADKEGFHPILSDVPPEH 214
           V RG   Y+ P+H +R        EG+     ++ P+H
Sbjct: 396 VKRGDIFYIPPKHNIRFSSCSEPLEGYRTFSYEMGPDH 433


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 194 SDVPPEHPADSESVALA-KDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSE 370
           +++P      +  +AL    ++FQ + K+  E    P PY  +VP  S      T K  +
Sbjct: 415 TEIPQPSYLQNPRIALVTSQQNFQHFPKLMNEQRASPGPYFRTVPSPSEYDEPTTTKKPK 474

Query: 371 LFRV 382
           +  V
Sbjct: 475 IVTV 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,299
Number of Sequences: 27780
Number of extensions: 243277
Number of successful extensions: 970
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)