Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6394
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 77  VMNIVHVIPWSQEQSFY 27
           V ++V V+ W QE SFY
Sbjct: 158 VKDLVRVVSWLQEPSFY 174


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 77  VMNIVHVIPWSQEQSFY 27
           V ++V V+ W QE SFY
Sbjct: 158 VKDLVRVVSWLQEPSFY 174


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 210 VSPDNALLCSRNRLDRLTL 154
           +SP  +LLC+  RL++L +
Sbjct: 61  MSPSLSLLCADTRLNKLAV 79


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 78  SYEYCSRYSLVSRTIILHPDQSARV 4
           +Y+Y  RY +    ++ HP  + R+
Sbjct: 319 TYKYSKRYKMAVAFMLSHPFGTPRI 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,719
Number of Sequences: 438
Number of extensions: 3570
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)